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Related entries of code: 2vnt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ejnRCSB PDB    PDBbind253aa, >1EJN_1|Chain... at 99%
1f5kRCSB PDB    PDBbind253aa, >1F5K_1|Chain... at 99%
1f5lRCSB PDB    PDBbind253aa, >1F5L_1|Chain... at 99%
1f92RCSB PDB    PDBbind253aa, >1F92_1|Chain... at 99%
1fv9RCSB PDB    PDBbind245aa, >1FV9_1|Chain... at 99%
1owdRCSB PDB    PDBbind245aa, >1OWD_1|Chain... at 99%
1oweRCSB PDB    PDBbind245aa, >1OWE_1|Chain... at 99%
1owhRCSB PDB    PDBbind245aa, >1OWH_1|Chain... at 99%
1owiRCSB PDB    PDBbind245aa, >1OWI_1|Chain... at 99%
1owjRCSB PDB    PDBbind245aa, >1OWJ_1|Chain... at 99%
1owkRCSB PDB    PDBbind245aa, >1OWK_1|Chain... at 99%
1sc8RCSB PDB    PDBbind262aa, >1SC8_1|Chain... at 99%
1sqaRCSB PDB    PDBbind245aa, >1SQA_1|Chain... at 99%
1sqoRCSB PDB    PDBbind245aa, >1SQO_1|Chain... at 99%
1sqtRCSB PDB    PDBbind245aa, >1SQT_1|Chain... at 99%
1u6qRCSB PDB    PDBbind245aa, >1U6Q_1|Chain... at 99%
1vj9RCSB PDB    PDBbind262aa, >1VJ9_1|Chain... at 99%
1vjaRCSB PDB    PDBbind262aa, >1VJA_1|Chain... at 99%
1w0zRCSB PDB    PDBbind247aa, >1W0Z_1|Chain... at 99%
1w10RCSB PDB    PDBbind247aa, >1W10_1|Chain... at 99%
1w11RCSB PDB    PDBbind247aa, >1W11_1|Chain... at 99%
1w12RCSB PDB    PDBbind247aa, >1W12_1|Chain... at 99%
1w13RCSB PDB    PDBbind247aa, >1W13_1|Chain... at 99%
1w14RCSB PDB    PDBbind247aa, >1W14_1|Chain... at 99%
2r2wRCSB PDB    PDBbind253aa, >2R2W_1|Chain... at 99%
2vinRCSB PDB    PDBbind253aa, >2VIN_1|Chain... at 99%
2vioRCSB PDB    PDBbind253aa, >2VIO_1|Chain... at 99%
2vipRCSB PDB    PDBbind253aa, >2VIP_1|Chain... at 99%
2viqRCSB PDB    PDBbind253aa, >2VIQ_1|Chain... at 99%
2vivRCSB PDB    PDBbind253aa, >2VIV_1|Chain... at 99%
2viwRCSB PDB    PDBbind253aa, >2VIW_1|Chain... at 99%
3kgpRCSB PDB    PDBbind253aa, >3KGP_1|Chain... at 99%
3khvRCSB PDB    PDBbind253aa, >3KHV_1|Chain... at 99%
3kidRCSB PDB    PDBbind253aa, >3KID_1|Chain... at 99%
3mhwRCSB PDB    PDBbind247aa, >3MHW_1|Chain... at 99%
4h42RCSB PDB    PDBbind248aa, >4H42_1|Chain... at 99%
4mnvRCSB PDB    PDBbind245aa, >4MNV_1|Chain... at 99%
4x1nRCSB PDB    PDBbind247aa, >4X1N_2|Chain... at 98%
4x1pRCSB PDB    PDBbind247aa, >4X1P_1|Chain... at 98%
4x1qRCSB PDB    PDBbind247aa, >4X1Q_2|Chain... at 98%
4x1rRCSB PDB    PDBbind247aa, >4X1R_2|Chain... at 98%
4x1sRCSB PDB    PDBbind247aa, >4X1S_2|Chain... at 98%
4zhlRCSB PDB    PDBbind247aa, >4ZHL_1|Chain... at 98%
4zhmRCSB PDB    PDBbind247aa, >4ZHM_2|Chain... at 98%
5wxpRCSB PDB    PDBbind253aa, >5WXP_1|Chain... at 99%
5xg4RCSB PDB    PDBbind246aa, >5XG4_1|Chain... at 99%
5z1cRCSB PDB    PDBbind245aa, >5Z1C_1|Chain... at 99%
5za7RCSB PDB    PDBbind253aa, >5ZA7_1|Chain... at 99%
5za8RCSB PDB    PDBbind253aa, >5ZA8_1|Chain... at 99%
5za9RCSB PDB    PDBbind253aa, >5ZA9_1|Chain... at 99%
5zaeRCSB PDB    PDBbind253aa, >5ZAE_1|Chain... at 99%
5zafRCSB PDB    PDBbind253aa, >5ZAF_1|Chain... at 99%
5zagRCSB PDB    PDBbind253aa, >5ZAG_1|Chain... at 99%
5zahRCSB PDB    PDBbind253aa, >5ZAH_1|Chain... at 99%
5zajRCSB PDB    PDBbind253aa, >5ZAJ_1|Chain... at 99%
5zc5RCSB PDB    PDBbind253aa, >5ZC5_1|Chain... at 99%
6nmbRCSB PDB    PDBbind281aa, >6NMB_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2vnt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameurokinase-type plasminogen activator (uPA)
Ligand NameQGG
EC.Number E.C.3.4.21.73
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Ki=9.9nM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2007) J.Med.Chem. Vol. 50: pp. 2341-2351
Ligand Properties
Formula C15H17ClN5O4S
Molecular Weight 398.845
Exact Mass 398.069
No. of atoms 43
No. of bonds 45
Polar Surface Area 159.59
LOGP Value 3.80      (Computed with XLOGP3)
1.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00749  
Entrez Gene IDNCBI Entrez Gene ID: 5328  
ASDInformation of known allosteric effects of PDB entries
 
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