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Related entries of code: 2vqt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vjxRCSB PDB    PDBbind846aa, >2VJX_1|Chains... *
2vl4RCSB PDB    PDBbind846aa, >2VL4_1|Chains... at 100%
2vmfRCSB PDB    PDBbind846aa, >2VMF_1|Chains... at 100%
2vo5RCSB PDB    PDBbind846aa, >2VO5_1|Chains... at 100%
2votRCSB PDB    PDBbind846aa, >2VOT_1|Chains... at 100%
2vr4RCSB PDB    PDBbind846aa, >2VR4_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2vqt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-Mannosidase
Ligand Name15A
EC.Number E.C.3.2.1.25
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=1.0uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Nat.Chem.Biol. Vol. 4: pp. 306
Ligand Properties
Formula C8H18N3O4
Molecular Weight 220.246
Exact Mass 220.130
No. of atoms 33
No. of bonds 33
Polar Surface Area 132.95
LOGP Value -3.43      (Computed with XLOGP3)
-4.00      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8AAK6  
Entrez Gene IDNCBI Entrez Gene ID: 60926418  
ASDInformation of known allosteric effects of PDB entries

 
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