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Related entries of code: 2vr4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vjxRCSB PDB    PDBbind846aa, >2VJX_1|Chains... *
2vl4RCSB PDB    PDBbind846aa, >2VL4_1|Chains... at 100%
2vmfRCSB PDB    PDBbind846aa, >2VMF_1|Chains... at 100%
2vo5RCSB PDB    PDBbind846aa, >2VO5_1|Chains... at 100%
2votRCSB PDB    PDBbind846aa, >2VOT_1|Chains... at 100%
2vqtRCSB PDB    PDBbind846aa, >2VQT_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2vr4
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameBeta-Mannosidase
Ligand Name17B
EC.Number E.C.3.2.1.25
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=2.1uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Nat.Chem.Biol. Vol. 4: pp. 306
Ligand Properties
Formula C10H22N3O4
Molecular Weight 248.299
Exact Mass 248.161
No. of atoms 39
No. of bonds 39
Polar Surface Area 132.95
LOGP Value -2.95      (Computed with XLOGP3)
-3.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8AAK6  
Entrez Gene IDNCBI Entrez Gene ID: 60926418  
ASDInformation of known allosteric effects of PDB entries

 
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