Browse entries in the PDBbind-CN Database

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Related entries of code: 2w08
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2a3wRCSB PDB    PDBbind204aa, >2A3W_1|Chains... *
2a3xRCSB PDB    PDBbind204aa, >2A3X_1|Chains... at 100%
3kqrRCSB PDB    PDBbind204aa, >3KQR_1|Chains... at 100%
4avsRCSB PDB    PDBbind204aa, >4AVS_1|Chains... at 100%
4avtRCSB PDB    PDBbind204aa, >4AVT_1|Chains... at 100%
4ayuRCSB PDB    PDBbind204aa, >4AYU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2w08
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman Serum amyloid P-component
Ligand NameTPO
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=380uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Proc.Natl.Acad.Sci.USA Vol. 106: pp. 7619-7623
Ligand Properties
Formula C4H12NO6P
Molecular Weight 201.115
Exact Mass 201.040
No. of atoms 24
No. of bonds 23
Polar Surface Area 148.45
LOGP Value -3.99      (Computed with XLOGP3)
-2.26      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P02743  
Entrez Gene IDNCBI Entrez Gene ID: 325  
ASDInformation of known allosteric effects of PDB entries

 
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