Browse entries in the PDBbind-CN Database

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Related entries of code: 2y34
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2g19RCSB PDB    PDBbind244aa, >2G19_1|Chain... at 97%
3ouhRCSB PDB    PDBbind237aa, >3OUH_1|Chain... at 100%
3ouiRCSB PDB    PDBbind213aa, >3OUI_1|Chain... at 100%
3oujRCSB PDB    PDBbind237aa, >3OUJ_1|Chain... at 100%
4bqwRCSB PDB    PDBbind252aa, >4BQW_1|Chain... at 100%
4bqxRCSB PDB    PDBbind252aa, >4BQX_1|Chain... at 100%
4bqyRCSB PDB    PDBbind252aa, >4BQY_1|Chain... at 100%
4jzrRCSB PDB    PDBbind216aa, >4JZR_1|Chain... at 97%
5a3uRCSB PDB    PDBbind252aa, >5A3U_1|Chains... at 100%
5ox5RCSB PDB    PDBbind252aa, >5OX5_1|Chain... at 100%
5ox6RCSB PDB    PDBbind252aa, >5OX6_1|Chain... at 100%
6st3RCSB PDB    PDBbind233aa, >6ST3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4bqxRCSB PDB    PDBbindUN9
4ie6RCSB PDB    PDBbindUN9

Entry Information
PDB ID2y34
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCatalytic Domain of Human PHD2
Ligand NameUN9
EC.Number E.C.1.14.11.29
Resolution 2.01(Å)
Affinity (Kd/Ki/IC50)Kd=80nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2013) J. Med. Chem., Vol.56, pp.547-555
Ligand Properties
Formula C12H9ClN2O4
Molecular Weight 280.664
Exact Mass 280.025
No. of atoms 28
No. of bonds 29
Polar Surface Area 99.52
LOGP Value 3.35      (Computed with XLOGP3)
1.80      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9GZT9  
Entrez Gene IDNCBI Entrez Gene ID: 54583  
ASDInformation of known allosteric effects of PDB entries

 
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