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Related entries of code: 5a3u
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2g19RCSB PDB    PDBbind244aa, >2G19_1|Chain... at 97%
2y34RCSB PDB    PDBbind252aa, >2Y34_1|Chain... *
3ouhRCSB PDB    PDBbind237aa, >3OUH_1|Chain... at 100%
3ouiRCSB PDB    PDBbind213aa, >3OUI_1|Chain... at 100%
3oujRCSB PDB    PDBbind237aa, >3OUJ_1|Chain... at 100%
4bqwRCSB PDB    PDBbind252aa, >4BQW_1|Chain... at 100%
4bqxRCSB PDB    PDBbind252aa, >4BQX_1|Chain... at 100%
4bqyRCSB PDB    PDBbind252aa, >4BQY_1|Chain... at 100%
4jzrRCSB PDB    PDBbind216aa, >4JZR_1|Chain... at 97%
5ox5RCSB PDB    PDBbind252aa, >5OX5_1|Chain... at 100%
5ox6RCSB PDB    PDBbind252aa, >5OX6_1|Chain... at 100%
6st3RCSB PDB    PDBbind233aa, >6ST3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5a3u
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHIF prolyl hydroxylase 2 (PHD2/EGLN1)
Ligand NameR8J
EC.Number E.C.1.14.11.29
Resolution 3.3(Å)
Affinity (Kd/Ki/IC50)IC50=4.8nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Plos One Vol. 10: pp.1-17
Ligand Properties
Formula C11H8N6O3
Molecular Weight 272.220
Exact Mass 272.066
No. of atoms 28
No. of bonds 30
Polar Surface Area 113.57
LOGP Value 0.53      (Computed with XLOGP3)
-0.55      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9GZT9  
Entrez Gene IDNCBI Entrez Gene ID: 54583  
ASDInformation of known allosteric effects of PDB entries

 
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