Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2yde
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1yciRCSB PDB    PDBbind349aa, >1YCI_1|Chain... at 100%
2w0xRCSB PDB    PDBbind349aa, >2W0X_1|Chain... at 100%
2wa3RCSB PDB    PDBbind349aa, >2WA3_1|Chain... at 100%
2wa4RCSB PDB    PDBbind349aa, >2WA4_1|Chain... at 100%
2yc0RCSB PDB    PDBbind352aa, >2YC0_1|Chain... *
4ai8RCSB PDB    PDBbind352aa, >4AI8_1|Chain... at 100%
4bioRCSB PDB    PDBbind352aa, >4BIO_1|Chain... at 100%
5op6RCSB PDB    PDBbind351aa, >5OP6_1|Chain... at 100%
5op8RCSB PDB    PDBbind350aa, >5OP8_1|Chain... at 99%
5opcRCSB PDB    PDBbind350aa, >5OPC_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2ybsRCSB PDB    PDBbindS2G

Entry Information
PDB ID2yde
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR
Ligand NameS2G
EC.Number E.C.1.14.11.16
Resolution 2.28(Å)
Affinity (Kd/Ki/IC50)IC50=189uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Embo Rep. Vol. 12: pp. 463-469
Ligand Properties
Formula C5H8O5
Molecular Weight 148.114
Exact Mass 148.037
No. of atoms 18
No. of bonds 17
Polar Surface Area 94.83
LOGP Value 1.35      (Computed with XLOGP3)
-0.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NWT6  
Entrez Gene IDNCBI Entrez Gene ID: 55662  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com