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Related entries of code: 2ynd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yneRCSB PDB    PDBbind384aa, >2YNE_1|Chains... at 100%
4a95RCSB PDB    PDBbind384aa, >4A95_1|Chains... at 100%
4b11RCSB PDB    PDBbind385aa, >4B11_1|Chains... at 99%
4b12RCSB PDB    PDBbind385aa, >4B12_1|Chains... at 99%
4b13RCSB PDB    PDBbind385aa, >4B13_1|Chains... at 99%
4b14RCSB PDB    PDBbind385aa, >4B14_1|Chains... at 99%
4bbhRCSB PDB    PDBbind384aa, >4BBH_1|Chains... at 100%
4c68RCSB PDB    PDBbind384aa, >4C68_1|Chains... at 100%
4caeRCSB PDB    PDBbind384aa, >4CAE_1|Chains... at 100%
4cafRCSB PDB    PDBbind384aa, >4CAF_1|Chains... at 100%
5g1zRCSB PDB    PDBbind385aa, >5G1Z_1|Chains... at 100%
5g22RCSB PDB    PDBbind385aa, >5G22_1|Chains... at 100%
5o48RCSB PDB    PDBbind385aa, >5O48_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2ynd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePlasmodium vivax N-myristoyltransferase
Ligand Name646
EC.Number E.C.2.3.1.97
Resolution 1.89(Å)
Affinity (Kd/Ki/IC50)Ki=32nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Nat.Chem. Vol. 6: pp. 112-121
Ligand Properties
Formula C21H25Cl2N6O2S
Molecular Weight 496.433
Exact Mass 495.114
No. of atoms 57
No. of bonds 60
Polar Surface Area 105.11
LOGP Value 3.17      (Computed with XLOGP3)
5.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A5K1A2  
Entrez Gene IDNCBI Entrez Gene ID: 5476134  
ASDInformation of known allosteric effects of PDB entries
 
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