Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5g1z
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yndRCSB PDB    PDBbind385aa, >2YND_1|Chains... *
2yneRCSB PDB    PDBbind384aa, >2YNE_1|Chains... at 100%
4a95RCSB PDB    PDBbind384aa, >4A95_1|Chains... at 100%
4b11RCSB PDB    PDBbind385aa, >4B11_1|Chains... at 99%
4b12RCSB PDB    PDBbind385aa, >4B12_1|Chains... at 99%
4b13RCSB PDB    PDBbind385aa, >4B13_1|Chains... at 99%
4b14RCSB PDB    PDBbind385aa, >4B14_1|Chains... at 99%
4bbhRCSB PDB    PDBbind384aa, >4BBH_1|Chains... at 100%
4c68RCSB PDB    PDBbind384aa, >4C68_1|Chains... at 100%
4caeRCSB PDB    PDBbind384aa, >4CAE_1|Chains... at 100%
4cafRCSB PDB    PDBbind384aa, >4CAF_1|Chains... at 100%
5g22RCSB PDB    PDBbind385aa, >5G22_1|Chains... at 100%
5o48RCSB PDB    PDBbind385aa, >5O48_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5g1z
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameN-myristoyltransferase
Ligand NameU53
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Ki=4.74uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Medchemcomm Vol. 8: pp. 191-197
Ligand Properties
Formula C16H16N2O3S
Molecular Weight 316.375
Exact Mass 316.088
No. of atoms 38
No. of bonds 39
Polar Surface Area 97.51
LOGP Value 2.58      (Computed with XLOGP3)
3.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A5K1A2  
Entrez Gene IDNCBI Entrez Gene ID: 5476134  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com