Browse entries in the PDBbind-CN Database

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Related entries of code: 2yz3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4c1dRCSB PDB    PDBbind242aa, >4C1D_1|Chains... at 99%
4c1eRCSB PDB    PDBbind242aa, >4C1E_1|Chains... at 99%
4pvoRCSB PDB    PDBbind242aa, >4PVO_1|Chains... at 99%
4pvtRCSB PDB    PDBbind242aa, >4PVT_1|Chains... at 99%
5acwRCSB PDB    PDBbind266aa, >5ACW_1|Chains... at 100%
5acxRCSB PDB    PDBbind266aa, >5ACX_1|Chains... at 100%
5fqcRCSB PDB    PDBbind242aa, >5FQC_1|Chains... at 99%
5k48RCSB PDB    PDBbind242aa, >5K48_1|Chains... at 99%
5lcaRCSB PDB    PDBbind266aa, >5LCA_1|Chain... at 100%
5lcfRCSB PDB    PDBbind266aa, >5LCF_1|Chain... at 100%
5lchRCSB PDB    PDBbind266aa, >5LCH_1|Chain... at 100%
5le1RCSB PDB    PDBbind266aa, >5LE1_1|Chain... at 100%
5lm6RCSB PDB    PDBbind266aa, >5LM6_1|Chains... at 100%
5lscRCSB PDB    PDBbind240aa, >5LSC_1|Chains... at 100%
5mm9RCSB PDB    PDBbind241aa, >5MM9_1|Chains... at 99%
5mxqRCSB PDB    PDBbind231aa, >5MXQ_1|Chain... at 100%
5mxrRCSB PDB    PDBbind232aa, >5MXR_1|Chain... at 100%
5n4sRCSB PDB    PDBbind232aa, >5N4S_1|Chains... at 99%
5n4tRCSB PDB    PDBbind234aa, >5N4T_1|Chains... at 100%
5nhzRCSB PDB    PDBbind266aa, >5NHZ_1|Chains... at 100%
5ni0RCSB PDB    PDBbind266aa, >5NI0_1|Chains... at 100%
5y6dRCSB PDB    PDBbind231aa, >5Y6D_1|Chains... at 100%
5y6eRCSB PDB    PDBbind231aa, >5Y6E_1|Chains... at 100%
6ew3RCSB PDB    PDBbind232aa, >6EW3_1|Chains... at 100%
6hf5RCSB PDB    PDBbind231aa, >6HF5_1|Chain... at 100%
6o5tRCSB PDB    PDBbind242aa, >6O5T_1|Chains... at 99%
6jn6RCSB PDB    PDBbind231aa, >6JN6_1|Chains... at 100%
6j8rRCSB PDB    PDBbind231aa, >6J8R_1|Chain... at 100%
6dd1RCSB PDB    PDBbind242aa, >6DD1_1|Chains... at 99%
5o7nRCSB PDB    PDBbind254aa, >5O7N_1|Chains... at 94%
6dd0RCSB PDB    PDBbind242aa, >6DD0_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2yz3
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameVIM-2
Ligand NameM5P
EC.Number E.C.3.5.2.6
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=220nM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2007) J.Med.Chem. Vol. 50: pp. 6647-6653
Ligand Properties
Formula C12H16O2S
Molecular Weight 224.319
Exact Mass 224.087
No. of atoms 31
No. of bonds 31
Polar Surface Area 76.1
LOGP Value 4.10      (Computed with XLOGP3)
2.64      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7BJM5  
Entrez Gene IDNCBI Entrez Gene ID: 61723701  
ASDInformation of known allosteric effects of PDB entries
 
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