Browse entries in the PDBbind-CN Database

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Related entries of code: 6dd0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yz3RCSB PDB    PDBbind266aa, >2YZ3_1|Chains... *
4c1dRCSB PDB    PDBbind242aa, >4C1D_1|Chains... at 99%
4c1eRCSB PDB    PDBbind242aa, >4C1E_1|Chains... at 99%
4pvoRCSB PDB    PDBbind242aa, >4PVO_1|Chains... at 99%
4pvtRCSB PDB    PDBbind242aa, >4PVT_1|Chains... at 99%
5acwRCSB PDB    PDBbind266aa, >5ACW_1|Chains... at 100%
5acxRCSB PDB    PDBbind266aa, >5ACX_1|Chains... at 100%
5fqcRCSB PDB    PDBbind242aa, >5FQC_1|Chains... at 99%
5k48RCSB PDB    PDBbind242aa, >5K48_1|Chains... at 99%
5lcaRCSB PDB    PDBbind266aa, >5LCA_1|Chain... at 100%
5lcfRCSB PDB    PDBbind266aa, >5LCF_1|Chain... at 100%
5lchRCSB PDB    PDBbind266aa, >5LCH_1|Chain... at 100%
5le1RCSB PDB    PDBbind266aa, >5LE1_1|Chain... at 100%
5lm6RCSB PDB    PDBbind266aa, >5LM6_1|Chains... at 100%
5lscRCSB PDB    PDBbind240aa, >5LSC_1|Chains... at 100%
5mm9RCSB PDB    PDBbind241aa, >5MM9_1|Chains... at 99%
5mxqRCSB PDB    PDBbind231aa, >5MXQ_1|Chain... at 100%
5mxrRCSB PDB    PDBbind232aa, >5MXR_1|Chain... at 100%
5n4sRCSB PDB    PDBbind232aa, >5N4S_1|Chains... at 99%
5n4tRCSB PDB    PDBbind234aa, >5N4T_1|Chains... at 100%
5nhzRCSB PDB    PDBbind266aa, >5NHZ_1|Chains... at 100%
5ni0RCSB PDB    PDBbind266aa, >5NI0_1|Chains... at 100%
5y6dRCSB PDB    PDBbind231aa, >5Y6D_1|Chains... at 100%
5y6eRCSB PDB    PDBbind231aa, >5Y6E_1|Chains... at 100%
6ew3RCSB PDB    PDBbind232aa, >6EW3_1|Chains... at 100%
6hf5RCSB PDB    PDBbind231aa, >6HF5_1|Chain... at 100%
6o5tRCSB PDB    PDBbind242aa, >6O5T_1|Chains... at 99%
6jn6RCSB PDB    PDBbind231aa, >6JN6_1|Chains... at 100%
6j8rRCSB PDB    PDBbind231aa, >6J8R_1|Chain... at 100%
6dd1RCSB PDB    PDBbind242aa, >6DD1_1|Chains... at 99%
5o7nRCSB PDB    PDBbind254aa, >5O7N_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6dd0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-lactamase class B VIM-2
Ligand NameP9T
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Ki=3.3uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 8480-8496
Ligand Properties
Formula C10H8F2O5P
Molecular Weight 277.138
Exact Mass 277.008
No. of atoms 26
No. of bonds 27
Polar Surface Area 104.49
LOGP Value -0.53      (Computed with XLOGP3)
1.31      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9K2N0  
Entrez Gene IDNCBI Entrez Gene ID: 61723701  
ASDInformation of known allosteric effects of PDB entries
 
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