Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3d04
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2glmRCSB PDB    PDBbind171aa, >2GLM_1|Chains... *
2glpRCSB PDB    PDBbind171aa, >2GLP_1|Chains... at 100%
3b7jRCSB PDB    PDBbind159aa, >3B7J_1|Chains... at 100%
3cf8RCSB PDB    PDBbind159aa, >3CF8_1|Chains... at 100%
3cf9RCSB PDB    PDBbind159aa, >3CF9_1|Chains... at 100%
3doyRCSB PDB    PDBbind159aa, >3DOY_1|Chains... at 100%
3dozRCSB PDB    PDBbind159aa, >3DOZ_1|Chains... at 100%
3dp0RCSB PDB    PDBbind159aa, >3DP0_1|Chains... at 100%
3dp1RCSB PDB    PDBbind159aa, >3DP1_1|Chains... at 100%
3dp2RCSB PDB    PDBbind159aa, >3DP2_1|Chains... at 100%
3dp3RCSB PDB    PDBbind159aa, >3DP3_1|Chains... at 100%
3ed0RCSB PDB    PDBbind159aa, >3ED0_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3d04
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHpFabZ
Ligand NameSAK
EC.Number E.C.4.2.1.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=0.9uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Protein Sci. Vol. 17: pp. 1971-1978
Ligand Properties
Formula C16H14O5
Molecular Weight 286.279
Exact Mass 286.084
No. of atoms 35
No. of bonds 37
Polar Surface Area 75.99
LOGP Value 2.72      (Computed with XLOGP3)
2.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5G940  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com