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Related entries of code: 3ed0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2glmRCSB PDB    PDBbind171aa, >2GLM_1|Chains... *
2glpRCSB PDB    PDBbind171aa, >2GLP_1|Chains... at 100%
3b7jRCSB PDB    PDBbind159aa, >3B7J_1|Chains... at 100%
3cf8RCSB PDB    PDBbind159aa, >3CF8_1|Chains... at 100%
3cf9RCSB PDB    PDBbind159aa, >3CF9_1|Chains... at 100%
3d04RCSB PDB    PDBbind159aa, >3D04_1|Chains... at 100%
3doyRCSB PDB    PDBbind159aa, >3DOY_1|Chains... at 100%
3dozRCSB PDB    PDBbind159aa, >3DOZ_1|Chains... at 100%
3dp0RCSB PDB    PDBbind159aa, >3DP0_1|Chains... at 100%
3dp1RCSB PDB    PDBbind159aa, >3DP1_1|Chains... at 100%
3dp2RCSB PDB    PDBbind159aa, >3DP2_1|Chains... at 100%
3dp3RCSB PDB    PDBbind159aa, >3DP3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1f0qRCSB PDB    PDBbindEMO
3bqcRCSB PDB    PDBbindEMO
Entry Information
PDB ID3ed0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Name(3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori
Ligand NameEMO
EC.Number E.C.4.2.1.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=0.45uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) BMC MICROBIOL. Vol. 9: pp. 91-91
Ligand Properties
Formula C15H10O5
Molecular Weight 270.237
Exact Mass 270.053
No. of atoms 30
No. of bonds 32
Polar Surface Area 94.83
LOGP Value 2.72      (Computed with XLOGP3)
1.89      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5G940  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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