Browse entries in the PDBbind-CN Database

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Related entries of code: 3d8y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1afkRCSB PDB    PDBbind124aa, >1AFK_1|Chains... at 99%
1aflRCSB PDB    PDBbind124aa, >1AFL_1|Chains... at 99%
1dfjRCSB PDB    PDBbind124aa, >1DFJ_1|Chain... at 99%
1j7zRCSB PDB    PDBbind104aa, >1J7Z_2|Chain... at 99%
1j80RCSB PDB    PDBbind104aa, >1J80_2|Chain... at 99%
1j81RCSB PDB    PDBbind104aa, >1J81_2|Chain... at 99%
1jn4RCSB PDB    PDBbind124aa, >1JN4_1|Chains... at 99%
1jvuRCSB PDB    PDBbind124aa, >1JVU_1|Chains... at 99%
1o0fRCSB PDB    PDBbind124aa, >1O0F_1|Chains... at 99%
1o0hRCSB PDB    PDBbind124aa, >1O0H_1|Chains... at 99%
1o0mRCSB PDB    PDBbind124aa, >1O0M_1|Chains... at 99%
1o0nRCSB PDB    PDBbind124aa, >1O0N_1|Chains... at 99%
1o0oRCSB PDB    PDBbind124aa, >1O0O_1|Chains... at 99%
1qhcRCSB PDB    PDBbind124aa, >1QHC_1|Chains... at 99%
1rnmRCSB PDB    PDBbind124aa, >1RNM_1|Chain... at 99%
1rpfRCSB PDB    PDBbind124aa, >1RPF_1|Chain... at 99%
1u1bRCSB PDB    PDBbind124aa, >1U1B_1|Chains... at 99%
1w4oRCSB PDB    PDBbind124aa, >1W4O_1|Chains... at 99%
1w4pRCSB PDB    PDBbind124aa, >1W4P_1|Chains... at 99%
1w4qRCSB PDB    PDBbind124aa, >1W4Q_1|Chains... at 99%
1z6dRCSB PDB    PDBbind124aa, >1Z6D_1|Chains... at 99%
1z6sRCSB PDB    PDBbind124aa, >1Z6S_1|Chains... at 99%
2g8rRCSB PDB    PDBbind124aa, >2G8R_1|Chains... at 99%
2w5gRCSB PDB    PDBbind124aa, >2W5G_1|Chains... at 99%
2w5iRCSB PDB    PDBbind124aa, >2W5I_1|Chains... at 99%
2xogRCSB PDB    PDBbind124aa, >2XOG_1|Chains... at 99%
2xoiRCSB PDB    PDBbind124aa, >2XOI_1|Chains... at 99%
3d6oRCSB PDB    PDBbind124aa, >3D6O_1|Chains... at 99%
3d6pRCSB PDB    PDBbind124aa, >3D6P_1|Chains... at 99%
3d6qRCSB PDB    PDBbind124aa, >3D6Q_1|Chains... at 99%
3d7bRCSB PDB    PDBbind124aa, >3D7B_1|Chains... at 99%
3d8zRCSB PDB    PDBbind124aa, >3D8Z_1|Chains... at 99%
3dxgRCSB PDB    PDBbind124aa, >3DXG_1|Chains... at 99%
3dxhRCSB PDB    PDBbind124aa, >3DXH_1|Chains... at 99%
3lxoRCSB PDB    PDBbind124aa, >3LXO_1|Chain... at 99%
4g8vRCSB PDB    PDBbind124aa, >4G8V_1|Chains... at 99%
4g8yRCSB PDB    PDBbind124aa, >4G8Y_1|Chains... at 99%
4g90RCSB PDB    PDBbind124aa, >4G90_1|Chains... at 99%
4peqRCSB PDB    PDBbind124aa, >4PEQ_1|Chains... at 99%
4rskRCSB PDB    PDBbind124aa, >4RSK_1|Chain... at 96%
4wypRCSB PDB    PDBbind125aa, >4WYP_1|Chains... *
4wyzRCSB PDB    PDBbind125aa, >4WYZ_1|Chains... at 100%
6rsaRCSB PDB    PDBbind124aa, >6RSA_1|Chain... at 99%
6pvxRCSB PDB    PDBbind124aa, >6PVX_1|Chains... at 99%
6pvwRCSB PDB    PDBbind124aa, >6PVW_1|Chains... at 99%
6pvvRCSB PDB    PDBbind124aa, >6PVV_1|Chains... at 99%
6pvuRCSB PDB    PDBbind124aa, >6PVU_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3d8y
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRibonuclease pancreatic
Ligand NameT3S
EC.Number E.C.3.1.27.5
Resolution 1.72(Å)
Affinity (Kd/Ki/IC50)Ki=396uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Med.Chem.
Ligand Properties
Formula C15H24N3O4
Molecular Weight 310.369
Exact Mass 310.177
No. of atoms 46
No. of bonds 48
Polar Surface Area 88.76
LOGP Value 0.06      (Computed with XLOGP3)
0.13      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61823  
Entrez Gene IDNCBI Entrez Gene ID: 282340  
ASDInformation of known allosteric effects of PDB entries
 
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