Browse entries in the PDBbind-CN Database

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Related entries of code: 6pvv
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1afkRCSB PDB    PDBbind124aa, >1AFK_1|Chains... at 99%
1aflRCSB PDB    PDBbind124aa, >1AFL_1|Chains... at 99%
1dfjRCSB PDB    PDBbind124aa, >1DFJ_1|Chain... at 99%
1j7zRCSB PDB    PDBbind104aa, >1J7Z_2|Chain... at 99%
1j80RCSB PDB    PDBbind104aa, >1J80_2|Chain... at 99%
1j81RCSB PDB    PDBbind104aa, >1J81_2|Chain... at 99%
1jn4RCSB PDB    PDBbind124aa, >1JN4_1|Chains... at 99%
1jvuRCSB PDB    PDBbind124aa, >1JVU_1|Chains... at 99%
1o0fRCSB PDB    PDBbind124aa, >1O0F_1|Chains... at 99%
1o0hRCSB PDB    PDBbind124aa, >1O0H_1|Chains... at 99%
1o0mRCSB PDB    PDBbind124aa, >1O0M_1|Chains... at 99%
1o0nRCSB PDB    PDBbind124aa, >1O0N_1|Chains... at 99%
1o0oRCSB PDB    PDBbind124aa, >1O0O_1|Chains... at 99%
1qhcRCSB PDB    PDBbind124aa, >1QHC_1|Chains... at 99%
1rnmRCSB PDB    PDBbind124aa, >1RNM_1|Chain... at 99%
1rpfRCSB PDB    PDBbind124aa, >1RPF_1|Chain... at 99%
1u1bRCSB PDB    PDBbind124aa, >1U1B_1|Chains... at 99%
1w4oRCSB PDB    PDBbind124aa, >1W4O_1|Chains... at 99%
1w4pRCSB PDB    PDBbind124aa, >1W4P_1|Chains... at 99%
1w4qRCSB PDB    PDBbind124aa, >1W4Q_1|Chains... at 99%
1z6dRCSB PDB    PDBbind124aa, >1Z6D_1|Chains... at 99%
1z6sRCSB PDB    PDBbind124aa, >1Z6S_1|Chains... at 99%
2g8rRCSB PDB    PDBbind124aa, >2G8R_1|Chains... at 99%
2w5gRCSB PDB    PDBbind124aa, >2W5G_1|Chains... at 99%
2w5iRCSB PDB    PDBbind124aa, >2W5I_1|Chains... at 99%
2xogRCSB PDB    PDBbind124aa, >2XOG_1|Chains... at 99%
2xoiRCSB PDB    PDBbind124aa, >2XOI_1|Chains... at 99%
3d6oRCSB PDB    PDBbind124aa, >3D6O_1|Chains... at 99%
3d6pRCSB PDB    PDBbind124aa, >3D6P_1|Chains... at 99%
3d6qRCSB PDB    PDBbind124aa, >3D6Q_1|Chains... at 99%
3d7bRCSB PDB    PDBbind124aa, >3D7B_1|Chains... at 99%
3d8yRCSB PDB    PDBbind124aa, >3D8Y_1|Chains... at 99%
3d8zRCSB PDB    PDBbind124aa, >3D8Z_1|Chains... at 99%
3dxgRCSB PDB    PDBbind124aa, >3DXG_1|Chains... at 99%
3dxhRCSB PDB    PDBbind124aa, >3DXH_1|Chains... at 99%
3lxoRCSB PDB    PDBbind124aa, >3LXO_1|Chain... at 99%
4g8vRCSB PDB    PDBbind124aa, >4G8V_1|Chains... at 99%
4g8yRCSB PDB    PDBbind124aa, >4G8Y_1|Chains... at 99%
4g90RCSB PDB    PDBbind124aa, >4G90_1|Chains... at 99%
4peqRCSB PDB    PDBbind124aa, >4PEQ_1|Chains... at 99%
4rskRCSB PDB    PDBbind124aa, >4RSK_1|Chain... at 96%
4wypRCSB PDB    PDBbind125aa, >4WYP_1|Chains... *
4wyzRCSB PDB    PDBbind125aa, >4WYZ_1|Chains... at 100%
6rsaRCSB PDB    PDBbind124aa, >6RSA_1|Chain... at 99%
6pvxRCSB PDB    PDBbind124aa, >6PVX_1|Chains... at 99%
6pvwRCSB PDB    PDBbind124aa, >6PVW_1|Chains... at 99%
6pvuRCSB PDB    PDBbind124aa, >6PVU_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6pvv
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameRNase A
Ligand Name5FA
EC.Number E.C.4.6.1.18
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Ki=1.4uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 18400-18404
Ligand Properties
Formula C10H23N5O19P5
Molecular Weight 672.181
Exact Mass 671.968
No. of atoms 62
No. of bonds 64
Polar Surface Area 455.94
LOGP Value -8.42      (Computed with XLOGP3)
-3.00      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 16
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 24
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61823  
Entrez Gene IDNCBI Entrez Gene ID: 282340  
ASDInformation of known allosteric effects of PDB entries
 
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