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Related entries of code: 3djq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1n3zRCSB PDB    PDBbind124aa, >1N3Z_1|Chain... *
3djoRCSB PDB    PDBbind124aa, >3DJO_1|Chains... at 100%
3djpRCSB PDB    PDBbind124aa, >3DJP_1|Chains... at 100%
3djvRCSB PDB    PDBbind124aa, >3DJV_1|Chains... at 100%
3djxRCSB PDB    PDBbind124aa, >3DJX_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwwRCSB PDB    PDBbindUDP
1gx0RCSB PDB    PDBbindUDP
1gx4RCSB PDB    PDBbindUDP
1o7oRCSB PDB    PDBbindUDP
2vl8RCSB PDB    PDBbindUDP
3dxhRCSB PDB    PDBbindUDP
4ay5RCSB PDB    PDBbindUDP
4de7RCSB PDB    PDBbindUDP
4dmwRCSB PDB    PDBbindUDP
4gz3RCSB PDB    PDBbindUDP
6eytRCSB PDB    PDBbindUDP
Entry Information
PDB ID3djq
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSeminal ribonuclease
Ligand NameUDP
EC.Number E.C.3.1.27.5
Resolution 1.53(Å)
Affinity (Kd/Ki/IC50)Ki=1046.4uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Eur.J.Med.Chem. Vol. 44: pp. 4496-4508
Ligand Properties
Formula C9H16N2O12P2
Molecular Weight 406.177
Exact Mass 406.018
No. of atoms 41
No. of bonds 42
Polar Surface Area 251.34
LOGP Value -5.29      (Computed with XLOGP3)
-3.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00669  
Entrez Gene IDNCBI Entrez Gene ID: 280930  
ASDInformation of known allosteric effects of PDB entries
 
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