Browse entries in the PDBbind-CN Database

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Related entries of code: 4dmw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwwRCSB PDB    PDBbindUDP
1gx0RCSB PDB    PDBbindUDP
1gx4RCSB PDB    PDBbindUDP
1o7oRCSB PDB    PDBbindUDP
2vl8RCSB PDB    PDBbindUDP
3djqRCSB PDB    PDBbindUDP
3dxhRCSB PDB    PDBbindUDP
4ay5RCSB PDB    PDBbindUDP
4de7RCSB PDB    PDBbindUDP
4gz3RCSB PDB    PDBbindUDP
6eytRCSB PDB    PDBbindUDP
Entry Information
PDB ID4dmw
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameToxin A
Ligand NameUDP
EC.Number E.C.2.4.1
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=11.4uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Febs J. Vol. 279: pp. 3085-3097
Ligand Properties
Formula C9H16N2O12P2
Molecular Weight 406.177
Exact Mass 406.018
No. of atoms 41
No. of bonds 42
Polar Surface Area 251.34
LOGP Value -5.29      (Computed with XLOGP3)
-3.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P16154  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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