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Related entries of code: 3evd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3evcRCSB PDB    PDBbind277aa, >3EVC_1|Chain... *
3evfRCSB PDB    PDBbind277aa, >3EVF_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1jlrRCSB PDB    PDBbindGTP
2j7wRCSB PDB    PDBbindGTP
2xtnRCSB PDB    PDBbindGTP
3evcRCSB PDB    PDBbindGTP
3ffuRCSB PDB    PDBbindGTP
3rsbRCSB PDB    PDBbindGTP
4kaxRCSB PDB    PDBbindGTP
4kvaRCSB PDB    PDBbindGTP
4ncnRCSB PDB    PDBbindGTP
5efcRCSB PDB    PDBbindGTP
5ey0RCSB PDB    PDBbindGTP
5gofRCSB PDB    PDBbindGTP
6j72RCSB PDB    PDBbindGTP
6iaeRCSB PDB    PDBbindGTP
6ia7RCSB PDB    PDBbindGTP
6ak5RCSB PDB    PDBbindGTP
6sgeRCSB PDB    PDBbindGTP
Entry Information
PDB ID3evd
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameRNA-directed RNA polymerase NS5(YF)
Ligand NameGTP
EC.Number E.C.2.1.1.56
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Kd=124nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Mol.Biol. Vol. 385: pp. 1643-1654
Ligand Properties
Formula C10H20N5O14P3
Molecular Weight 527.212
Exact Mass 527.022
No. of atoms 52
No. of bonds 54
Polar Surface Area 350.6
LOGP Value -5.61      (Computed with XLOGP3)
-3.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03314  
Entrez Gene IDNCBI Entrez Gene ID: 1502173  
ASDInformation of known allosteric effects of PDB entries
 
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