Browse entries in the PDBbind-CN Database

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Related entries of code: 3m6p
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3m6qRCSB PDB    PDBbind193aa, >3M6Q_1|Chain... at 99%
3m6rRCSB PDB    PDBbind193aa, >3M6R_1|Chains... at 99%
3o3jRCSB PDB    PDBbind193aa, >3O3J_1|Chain... at 100%
3pn3RCSB PDB    PDBbind193aa, >3PN3_1|Chains... at 100%
3pn4RCSB PDB    PDBbind193aa, >3PN4_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g2aRCSB PDB    PDBbindBB2
1q1yRCSB PDB    PDBbindBB2
1ws1RCSB PDB    PDBbindBB2
3g5kRCSB PDB    PDBbindBB2
3m6qRCSB PDB    PDBbindBB2
3m6rRCSB PDB    PDBbindBB2
3pn4RCSB PDB    PDBbindBB2
4dr9RCSB PDB    PDBbindBB2
4je7RCSB PDB    PDBbindBB2
4q4eRCSB PDB    PDBbindBB2
5jf1RCSB PDB    PDBbindBB2
5mteRCSB PDB    PDBbindBB2
Entry Information
PDB ID3m6p
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePeptide deformylase 1B (PDF1B)
Ligand NameBB2
EC.Number E.C.3.5.1.88
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=4.5nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Plos Biol. Vol. 9: pp. e1001066-e1001066
Ligand Properties
Formula C19H35N3O5
Molecular Weight 385.498
Exact Mass 385.258
No. of atoms 62
No. of bonds 62
Polar Surface Area 118.97
LOGP Value 1.55      (Computed with XLOGP3)
1.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9FUZ2  
Entrez Gene IDNCBI Entrez Gene ID: 831318  
ASDInformation of known allosteric effects of PDB entries
 
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