Browse entries in the PDBbind-CN Database

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Related entries of code: 3pn3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3m6pRCSB PDB    PDBbind193aa, >3M6P_1|Chains... *
3m6qRCSB PDB    PDBbind193aa, >3M6Q_1|Chain... at 99%
3m6rRCSB PDB    PDBbind193aa, >3M6R_1|Chains... at 99%
3o3jRCSB PDB    PDBbind193aa, >3O3J_1|Chain... at 100%
3pn4RCSB PDB    PDBbind193aa, >3PN4_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5jf8RCSB PDB    PDBbindPN3
Entry Information
PDB ID3pn3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePeptide deformylase 1B, chloroplastic, AtPDF1B
Ligand NamePN3
EC.Number E.C.3.5.1.88
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)Ki=400nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Plos Biol. Vol. 9: pp. e1001066-e1001066
Ligand Properties
Formula C15H22N2O4
Molecular Weight 294.346
Exact Mass 294.158
No. of atoms 43
No. of bonds 43
Polar Surface Area 78.87
LOGP Value 1.97      (Computed with XLOGP3)
3.00      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9FUZ2  
Entrez Gene IDNCBI Entrez Gene ID: 831318  
ASDInformation of known allosteric effects of PDB entries
 
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