Browse entries in the PDBbind-CN Database

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Related entries of code: 3oap
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3b0wRCSB PDB    PDBbind243aa, >3B0W_1|Chains... at 100%
3o1dRCSB PDB    PDBbind13aa, >3O1D_2|Chain... at 100%
3o1eRCSB PDB    PDBbind13aa, >3O1E_2|Chain... at 100%
3ozjRCSB PDB    PDBbind11aa, >3OZJ_2|Chains... at 100%
4fhhRCSB PDB    PDBbind13aa, >4FHH_2|Chain... at 100%
4fhiRCSB PDB    PDBbind13aa, >4FHI_2|Chain... at 100%
4k4jRCSB PDB    PDBbind13aa, >4K4J_2|Chain... at 100%
4k6iRCSB PDB    PDBbind13aa, >4K6I_2|Chain... at 100%
4m8eRCSB PDB    PDBbind11aa, >4M8E_2|Chain... at 100%
4m8hRCSB PDB    PDBbind11aa, >4M8H_2|Chain... at 100%
4nb6RCSB PDB    PDBbind251aa, >4NB6_1|Chains... at 97%
4nieRCSB PDB    PDBbind12aa, >4NIE_2|Chains... at 100%
4pohRCSB PDB    PDBbind13aa, >4POH_2|Chain... at 100%
4pojRCSB PDB    PDBbind13aa, >4POJ_2|Chain... at 100%
4pp3RCSB PDB    PDBbind13aa, >4PP3_2|Chain... at 100%
4pp5RCSB PDB    PDBbind13aa, >4PP5_2|Chain... at 100%
4rmeRCSB PDB    PDBbind13aa, >4RME_2|Chain... at 100%
4wlbRCSB PDB    PDBbind265aa, >4WLB_1|Chains... at 96%
4xt9RCSB PDB    PDBbind243aa, >4XT9_1|Chain... at 100%
4ymqRCSB PDB    PDBbind280aa, >4YMQ_1|Chain... at 93%
4zjrRCSB PDB    PDBbind225aa, >4ZJR_1|Chains... at 99%
4zjwRCSB PDB    PDBbind225aa, >4ZJW_1|Chains... at 99%
4zomRCSB PDB    PDBbind225aa, >4ZOM_1|Chains... at 99%
4zshRCSB PDB    PDBbind13aa, >4ZSH_2|Chain... at 100%
5aphRCSB PDB    PDBbind12aa, >5APH_2|Chain... at 100%
5apjRCSB PDB    PDBbind12aa, >5APJ_2|Chain... at 100%
5c4oRCSB PDB    PDBbind241aa, >5C4O_1|Chain... at 99%
5c4sRCSB PDB    PDBbind241aa, >5C4S_1|Chain... at 99%
5c4tRCSB PDB    PDBbind241aa, >5C4T_1|Chain... at 99%
5c4uRCSB PDB    PDBbind241aa, >5C4U_1|Chain... at 99%
5ethRCSB PDB    PDBbind223aa, >5ETH_1|Chains... at 99%
5g42RCSB PDB    PDBbind266aa, >5G42_1|Chain... at 100%
5g43RCSB PDB    PDBbind12aa, >5G43_2|Chain... at 100%
5g45RCSB PDB    PDBbind266aa, >5G45_1|Chain... at 100%
5g46RCSB PDB    PDBbind266aa, >5G46_1|Chain... at 100%
5ni5RCSB PDB    PDBbind15aa, >5NI5_2|Chain... at 100%
5ni7RCSB PDB    PDBbind15aa, >5NI7_2|Chain... at 100%
5ni8RCSB PDB    PDBbind15aa, >5NI8_2|Chain... at 100%
5nibRCSB PDB    PDBbind15aa, >5NIB_2|Chain... at 100%
5ntkRCSB PDB    PDBbind230aa, >5NTK_1|Chains... at 98%
5ntpRCSB PDB    PDBbind238aa, >5NTP_1|Chain... at 98%
5ntqRCSB PDB    PDBbind238aa, >5NTQ_1|Chains... at 98%
5ufoRCSB PDB    PDBbind258aa, >5UFO_1|Chain... at 98%
5ufrRCSB PDB    PDBbind258aa, >5UFR_1|Chains... at 98%
5uhiRCSB PDB    PDBbind258aa, >5UHI_1|Chains... at 98%
5vb5RCSB PDB    PDBbind280aa, >5VB5_1|Chain... at 93%
5vb6RCSB PDB    PDBbind280aa, >5VB6_1|Chain... at 93%
5vb7RCSB PDB    PDBbind280aa, >5VB7_1|Chain... at 93%
5w4rRCSB PDB    PDBbind217aa, >5W4R_1|Chains... at 100%
5w4vRCSB PDB    PDBbind210aa, >5W4V_1|Chains... at 99%
5yp5RCSB PDB    PDBbind243aa, >5YP5_1|Chain... at 100%
5yp6RCSB PDB    PDBbind245aa, >5YP6_1|Chain... at 99%
5za1RCSB PDB    PDBbind234aa, >5ZA1_1|Chains... at 98%
6b30RCSB PDB    PDBbind215aa, >6B30_1|Chains... at 100%
6b31RCSB PDB    PDBbind228aa, >6B31_1|Chains... at 100%
6br2RCSB PDB    PDBbind215aa, >6BR2_1|Chains... at 100%
6br3RCSB PDB    PDBbind216aa, >6BR3_1|Chains... at 100%
6cn5RCSB PDB    PDBbind262aa, >6CN5_1|Chains... at 92%
6cn6RCSB PDB    PDBbind259aa, >6CN6_1|Chain... at 93%
6esnRCSB PDB    PDBbind12aa, >6ESN_2|Chain... at 100%
6fgqRCSB PDB    PDBbind265aa, >6FGQ_1|Chains... at 100%
6r7kRCSB PDB    PDBbind15aa, >6R7K_2|Chain... at 100%
6r7jRCSB PDB    PDBbind15aa, >6R7J_2|Chain... at 100%
6q7hRCSB PDB    PDBbind238aa, >6Q7H_1|Chain... at 98%
6q7aRCSB PDB    PDBbind238aa, >6Q7A_1|Chain... at 98%
6q6oRCSB PDB    PDBbind238aa, >6Q6O_1|Chain... at 98%
6q6mRCSB PDB    PDBbind238aa, >6Q6M_1|Chain... at 98%
6nadRCSB PDB    PDBbind243aa, >6NAD_1|Chains... at 100%
6j1lRCSB PDB    PDBbind267aa, >6J1L_1|Chains... at 92%
6e3gRCSB PDB    PDBbind245aa, >6E3G_1|Chains... at 99%
6b33RCSB PDB    PDBbind218aa, >6B33_1|Chains... at 100%
6salRCSB PDB    PDBbind243aa, >6SAL_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1avpRCSB PDB    PDBbind11-mer
1bbzRCSB PDB    PDBbind11-mer
1c5fRCSB PDB    PDBbind11-mer
1cwbRCSB PDB    PDBbind11-mer
1cwcRCSB PDB    PDBbind11-mer
1cynRCSB PDB    PDBbind11-mer
1d4tRCSB PDB    PDBbind11-mer
1d4wRCSB PDB    PDBbind11-mer
1d8eRCSB PDB    PDBbind11-mer
1ddmRCSB PDB    PDBbind11-mer
1ff1RCSB PDB    PDBbind11-mer
1h25RCSB PDB    PDBbind11-mer
1h26RCSB PDB    PDBbind11-mer
1h27RCSB PDB    PDBbind11-mer
1h28RCSB PDB    PDBbind11-mer
1h3hRCSB PDB    PDBbind11-mer
1h6eRCSB PDB    PDBbind11-mer
1iq1RCSB PDB    PDBbind11-mer
1irsRCSB PDB    PDBbind11-mer
1jm4RCSB PDB    PDBbind11-mer
1l2zRCSB PDB    PDBbind11-mer
1lcjRCSB PDB    PDBbind11-mer
1mikRCSB PDB    PDBbind11-mer
1om2RCSB PDB    PDBbind11-mer
1ox9RCSB PDB    PDBbind11-mer
1qngRCSB PDB    PDBbind11-mer
1qnhRCSB PDB    PDBbind11-mer
1s9vRCSB PDB    PDBbind11-mer
1spsRCSB PDB    PDBbind11-mer
1thsRCSB PDB    PDBbind11-mer
1uj0RCSB PDB    PDBbind11-mer
1ukhRCSB PDB    PDBbind11-mer
1xn2RCSB PDB    PDBbind11-mer
1zh7RCSB PDB    PDBbind11-mer
1zubRCSB PDB    PDBbind11-mer
2aofRCSB PDB    PDBbind11-mer
2aoiRCSB PDB    PDBbind11-mer
2bj4RCSB PDB    PDBbind11-mer
2bz8RCSB PDB    PDBbind11-mer
2ciaRCSB PDB    PDBbind11-mer
2cv3RCSB PDB    PDBbind11-mer
2eh8RCSB PDB    PDBbind11-mer
2ez5RCSB PDB    PDBbind11-mer
2h2gRCSB PDB    PDBbind11-mer
2h2hRCSB PDB    PDBbind11-mer
2h9mRCSB PDB    PDBbind11-mer
2h9nRCSB PDB    PDBbind11-mer
2h9pRCSB PDB    PDBbind11-mer
2hdxRCSB PDB    PDBbind11-mer
2hmhRCSB PDB    PDBbind11-mer
2jdlRCSB PDB    PDBbind11-mer
2jkrRCSB PDB    PDBbind11-mer
2jktRCSB PDB    PDBbind11-mer
2kplRCSB PDB    PDBbind11-mer
2ks9RCSB PDB    PDBbind11-mer
2ksaRCSB PDB    PDBbind11-mer
2ksbRCSB PDB    PDBbind11-mer
2l3rRCSB PDB    PDBbind11-mer
2m0oRCSB PDB    PDBbind11-mer
2m3mRCSB PDB    PDBbind11-mer
2m3oRCSB PDB    PDBbind11-mer
2o9kRCSB PDB    PDBbind11-mer
2or9RCSB PDB    PDBbind11-mer
2qhrRCSB PDB    PDBbind11-mer
2r02RCSB PDB    PDBbind11-mer
2r05RCSB PDB    PDBbind11-mer
2w9rRCSB PDB    PDBbind11-mer
2wfjRCSB PDB    PDBbind11-mer
2x2cRCSB PDB    PDBbind11-mer
2z6wRCSB PDB    PDBbind11-mer
3aslRCSB PDB    PDBbind11-mer
3ax5RCSB PDB    PDBbind11-mer
3dpoRCSB PDB    PDBbind11-mer
3e8uRCSB PDB    PDBbind11-mer
3eovRCSB PDB    PDBbind11-mer
3eyfRCSB PDB    PDBbind11-mer
3gxzRCSB PDB    PDBbind11-mer
3i90RCSB PDB    PDBbind11-mer
3iiwRCSB PDB    PDBbind11-mer
3iiyRCSB PDB    PDBbind11-mer
3ij0RCSB PDB    PDBbind11-mer
3ij1RCSB PDB    PDBbind11-mer
3lglRCSB PDB    PDBbind11-mer
3ll8RCSB PDB    PDBbind11-mer
3m53RCSB PDB    PDBbind11-mer
3m54RCSB PDB    PDBbind11-mer
3m55RCSB PDB    PDBbind11-mer
3m56RCSB PDB    PDBbind11-mer
3m57RCSB PDB    PDBbind11-mer
3m58RCSB PDB    PDBbind11-mer
3m59RCSB PDB    PDBbind11-mer
3m5aRCSB PDB    PDBbind11-mer
3me9RCSB PDB    PDBbind11-mer
3meaRCSB PDB    PDBbind11-mer
3metRCSB PDB    PDBbind11-mer
3odiRCSB PDB    PDBbind11-mer
3odlRCSB PDB    PDBbind11-mer
3p4fRCSB PDB    PDBbind11-mer
3p9hRCSB PDB    PDBbind11-mer
3pqzRCSB PDB    PDBbind11-mer
3qzvRCSB PDB    PDBbind11-mer
3rbqRCSB PDB    PDBbind11-mer
3rl7RCSB PDB    PDBbind11-mer
3rl8RCSB PDB    PDBbind11-mer
3rwdRCSB PDB    PDBbind11-mer
3tg5RCSB PDB    PDBbind11-mer
3u0tRCSB PDB    PDBbind11-mer
3uvkRCSB PDB    PDBbind11-mer
3uvlRCSB PDB    PDBbind11-mer
3uvnRCSB PDB    PDBbind11-mer
3uvoRCSB PDB    PDBbind11-mer
3uvxRCSB PDB    PDBbind11-mer
3uw9RCSB PDB    PDBbind11-mer
3v2xRCSB PDB    PDBbind11-mer
3va4RCSB PDB    PDBbind11-mer
3zkeRCSB PDB    PDBbind11-mer
3zkfRCSB PDB    PDBbind11-mer
4aa2RCSB PDB    PDBbind11-mer
4b8oRCSB PDB    PDBbind11-mer
4bd3RCSB PDB    PDBbind11-mer
4ds1RCSB PDB    PDBbind11-mer
4e9cRCSB PDB    PDBbind11-mer
4fgyRCSB PDB    PDBbind11-mer
4g69RCSB PDB    PDBbind11-mer
4ht6RCSB PDB    PDBbind11-mer
4htpRCSB PDB    PDBbind11-mer
4hybRCSB PDB    PDBbind11-mer
4j7iRCSB PDB    PDBbind11-mer
4j8gRCSB PDB    PDBbind11-mer
4jjmRCSB PDB    PDBbind11-mer
4ln2RCSB PDB    PDBbind11-mer
4n7gRCSB PDB    PDBbind11-mer
4n7yRCSB PDB    PDBbind11-mer
4o3tRCSB PDB    PDBbind11-mer
4o62RCSB PDB    PDBbind11-mer
4pl6RCSB PDB    PDBbind11-mer
4pliRCSB PDB    PDBbind11-mer
4pr5RCSB PDB    PDBbind11-mer
4praRCSB PDB    PDBbind11-mer
4prbRCSB PDB    PDBbind11-mer
4prdRCSB PDB    PDBbind11-mer
4preRCSB PDB    PDBbind11-mer
4prhRCSB PDB    PDBbind11-mer
4priRCSB PDB    PDBbind11-mer
4prnRCSB PDB    PDBbind11-mer
4prpRCSB PDB    PDBbind11-mer
4pxfRCSB PDB    PDBbind11-mer
4qc1RCSB PDB    PDBbind11-mer
4qyoRCSB PDB    PDBbind11-mer
4tk1RCSB PDB    PDBbind11-mer
4tk2RCSB PDB    PDBbind11-mer
4tk3RCSB PDB    PDBbind11-mer
4tk4RCSB PDB    PDBbind11-mer
4tmpRCSB PDB    PDBbind11-mer
4u68RCSB PDB    PDBbind11-mer
4u91RCSB PDB    PDBbind11-mer
4w5aRCSB PDB    PDBbind11-mer
4wphRCSB PDB    PDBbind11-mer
4x6sRCSB PDB    PDBbind11-mer
4xc2RCSB PDB    PDBbind11-mer
4yjeRCSB PDB    PDBbind11-mer
4yk6RCSB PDB    PDBbind11-mer
4yv9RCSB PDB    PDBbind11-mer
4yy6RCSB PDB    PDBbind11-mer
4yyiRCSB PDB    PDBbind11-mer
4yymRCSB PDB    PDBbind11-mer
4yynRCSB PDB    PDBbind11-mer
5a0eRCSB PDB    PDBbind11-mer
5aguRCSB PDB    PDBbind11-mer
5agvRCSB PDB    PDBbind11-mer
5ah2RCSB PDB    PDBbind11-mer
5awtRCSB PDB    PDBbind11-mer
5awuRCSB PDB    PDBbind11-mer
5b6cRCSB PDB    PDBbind11-mer
5c6vRCSB PDB    PDBbind11-mer
5c7eRCSB PDB    PDBbind11-mer
5c7fRCSB PDB    PDBbind11-mer
5cszRCSB PDB    PDBbind11-mer
5dahRCSB PDB    PDBbind11-mer
5ewzRCSB PDB    PDBbind11-mer
5ez0RCSB PDB    PDBbind11-mer
5hpmRCSB PDB    PDBbind11-mer
5ickRCSB PDB    PDBbind11-mer
5id0RCSB PDB    PDBbind11-mer
5igqRCSB PDB    PDBbind11-mer
5jinRCSB PDB    PDBbind11-mer
5jiyRCSB PDB    PDBbind11-mer
5jm4RCSB PDB    PDBbind11-mer
5kezRCSB PDB    PDBbind11-mer
5l3fRCSB PDB    PDBbind11-mer
5l3gRCSB PDB    PDBbind11-mer
5lgqRCSB PDB    PDBbind11-mer
5mlwRCSB PDB    PDBbind11-mer
5nneRCSB PDB    PDBbind11-mer
5svxRCSB PDB    PDBbind11-mer
5svyRCSB PDB    PDBbind11-mer
5tdrRCSB PDB    PDBbind11-mer
5tdwRCSB PDB    PDBbind11-mer
5tq1RCSB PDB    PDBbind11-mer
5tqsRCSB PDB    PDBbind11-mer
5vlkRCSB PDB    PDBbind11-mer
5xhzRCSB PDB    PDBbind11-mer
5ygdRCSB PDB    PDBbind11-mer
6au5RCSB PDB    PDBbind11-mer
6axjRCSB PDB    PDBbind11-mer
6axpRCSB PDB    PDBbind11-mer
6aynRCSB PDB    PDBbind11-mer
6azkRCSB PDB    PDBbind11-mer
6azlRCSB PDB    PDBbind11-mer
6ct7RCSB PDB    PDBbind11-mer
6g0qRCSB PDB    PDBbind11-mer
6qzrRCSB PDB    PDBbind11-mer
6qtwRCSB PDB    PDBbind11-mer
6qs1RCSB PDB    PDBbind11-mer
6om2RCSB PDB    PDBbind11-mer
6i5nRCSB PDB    PDBbind11-mer
6i5jRCSB PDB    PDBbind11-mer
6i4xRCSB PDB    PDBbind11-mer
6hksRCSB PDB    PDBbind11-mer
6gy5RCSB PDB    PDBbind11-mer
6g8qRCSB PDB    PDBbind11-mer
6g8pRCSB PDB    PDBbind11-mer
6g8lRCSB PDB    PDBbind11-mer
6g8kRCSB PDB    PDBbind11-mer
6g8jRCSB PDB    PDBbind11-mer
6g8iRCSB PDB    PDBbind11-mer
6g6xRCSB PDB    PDBbind11-mer

Entry Information
PDB ID3oap
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinoic acid receptor RXR-alpha(hRXRalpha-LBD)
Ligand Name11-mer
EC.Number E.C.-.-.-.-
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)Kd=0.55uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference Biochemistry, 50, 93-105
Ligand Properties
Formula C63H113N21O15
Molecular Weight 1404.700
Exact Mass 1403.870
No. of atoms 212
No. of bonds 213
Polar Surface Area 614.98
LOGP Value -2.27      (Computed with XLOGP3)
-1.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 16
No. of Hydrogen Bond Acceptors: 17
No. of Rotatable Bonds: 58
No. of Nitrogen and Oxygen Atoms: 36
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P19793  Q15596  
Entrez Gene IDNCBI Entrez Gene ID: 6256  10499  
ASDInformation of known allosteric effects of PDB entries

 
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