Browse entries in the PDBbind-CN Database

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Related entries of code: 3o1d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3b0wRCSB PDB    PDBbind243aa, >3B0W_1|Chains... at 100%
3o1eRCSB PDB    PDBbind13aa, >3O1E_2|Chain... at 100%
3oapRCSB PDB    PDBbind11aa, >3OAP_2|Chain... at 100%
3ozjRCSB PDB    PDBbind11aa, >3OZJ_2|Chains... at 100%
4fhhRCSB PDB    PDBbind13aa, >4FHH_2|Chain... at 100%
4fhiRCSB PDB    PDBbind13aa, >4FHI_2|Chain... at 100%
4k4jRCSB PDB    PDBbind13aa, >4K4J_2|Chain... at 100%
4k6iRCSB PDB    PDBbind13aa, >4K6I_2|Chain... at 100%
4m8eRCSB PDB    PDBbind11aa, >4M8E_2|Chain... at 100%
4m8hRCSB PDB    PDBbind11aa, >4M8H_2|Chain... at 100%
4nb6RCSB PDB    PDBbind251aa, >4NB6_1|Chains... at 97%
4nieRCSB PDB    PDBbind12aa, >4NIE_2|Chains... at 100%
4pohRCSB PDB    PDBbind13aa, >4POH_2|Chain... at 100%
4pojRCSB PDB    PDBbind13aa, >4POJ_2|Chain... at 100%
4pp3RCSB PDB    PDBbind13aa, >4PP3_2|Chain... at 100%
4pp5RCSB PDB    PDBbind13aa, >4PP5_2|Chain... at 100%
4rmeRCSB PDB    PDBbind13aa, >4RME_2|Chain... at 100%
4wlbRCSB PDB    PDBbind265aa, >4WLB_1|Chains... at 96%
4xt9RCSB PDB    PDBbind243aa, >4XT9_1|Chain... at 100%
4ymqRCSB PDB    PDBbind280aa, >4YMQ_1|Chain... at 93%
4zjrRCSB PDB    PDBbind225aa, >4ZJR_1|Chains... at 99%
4zjwRCSB PDB    PDBbind225aa, >4ZJW_1|Chains... at 99%
4zomRCSB PDB    PDBbind225aa, >4ZOM_1|Chains... at 99%
4zshRCSB PDB    PDBbind13aa, >4ZSH_2|Chain... at 100%
5aphRCSB PDB    PDBbind12aa, >5APH_2|Chain... at 100%
5apjRCSB PDB    PDBbind12aa, >5APJ_2|Chain... at 100%
5c4oRCSB PDB    PDBbind241aa, >5C4O_1|Chain... at 99%
5c4sRCSB PDB    PDBbind241aa, >5C4S_1|Chain... at 99%
5c4tRCSB PDB    PDBbind241aa, >5C4T_1|Chain... at 99%
5c4uRCSB PDB    PDBbind241aa, >5C4U_1|Chain... at 99%
5ethRCSB PDB    PDBbind223aa, >5ETH_1|Chains... at 99%
5g42RCSB PDB    PDBbind266aa, >5G42_1|Chain... at 100%
5g43RCSB PDB    PDBbind12aa, >5G43_2|Chain... at 100%
5g45RCSB PDB    PDBbind266aa, >5G45_1|Chain... at 100%
5g46RCSB PDB    PDBbind266aa, >5G46_1|Chain... at 100%
5ni5RCSB PDB    PDBbind15aa, >5NI5_2|Chain... at 100%
5ni7RCSB PDB    PDBbind15aa, >5NI7_2|Chain... at 100%
5ni8RCSB PDB    PDBbind15aa, >5NI8_2|Chain... at 100%
5nibRCSB PDB    PDBbind15aa, >5NIB_2|Chain... at 100%
5ntkRCSB PDB    PDBbind230aa, >5NTK_1|Chains... at 98%
5ntpRCSB PDB    PDBbind238aa, >5NTP_1|Chain... at 98%
5ntqRCSB PDB    PDBbind238aa, >5NTQ_1|Chains... at 98%
5ufoRCSB PDB    PDBbind258aa, >5UFO_1|Chain... at 98%
5ufrRCSB PDB    PDBbind258aa, >5UFR_1|Chains... at 98%
5uhiRCSB PDB    PDBbind258aa, >5UHI_1|Chains... at 98%
5vb5RCSB PDB    PDBbind280aa, >5VB5_1|Chain... at 93%
5vb6RCSB PDB    PDBbind280aa, >5VB6_1|Chain... at 93%
5vb7RCSB PDB    PDBbind280aa, >5VB7_1|Chain... at 93%
5w4rRCSB PDB    PDBbind217aa, >5W4R_1|Chains... at 100%
5w4vRCSB PDB    PDBbind210aa, >5W4V_1|Chains... at 99%
5yp5RCSB PDB    PDBbind243aa, >5YP5_1|Chain... at 100%
5yp6RCSB PDB    PDBbind245aa, >5YP6_1|Chain... at 99%
5za1RCSB PDB    PDBbind234aa, >5ZA1_1|Chains... at 98%
6b30RCSB PDB    PDBbind215aa, >6B30_1|Chains... at 100%
6b31RCSB PDB    PDBbind228aa, >6B31_1|Chains... at 100%
6br2RCSB PDB    PDBbind215aa, >6BR2_1|Chains... at 100%
6br3RCSB PDB    PDBbind216aa, >6BR3_1|Chains... at 100%
6cn5RCSB PDB    PDBbind262aa, >6CN5_1|Chains... at 92%
6cn6RCSB PDB    PDBbind259aa, >6CN6_1|Chain... at 93%
6esnRCSB PDB    PDBbind12aa, >6ESN_2|Chain... at 100%
6fgqRCSB PDB    PDBbind265aa, >6FGQ_1|Chains... at 100%
6r7kRCSB PDB    PDBbind15aa, >6R7K_2|Chain... at 100%
6r7jRCSB PDB    PDBbind15aa, >6R7J_2|Chain... at 100%
6q7hRCSB PDB    PDBbind238aa, >6Q7H_1|Chain... at 98%
6q7aRCSB PDB    PDBbind238aa, >6Q7A_1|Chain... at 98%
6q6oRCSB PDB    PDBbind238aa, >6Q6O_1|Chain... at 98%
6q6mRCSB PDB    PDBbind238aa, >6Q6M_1|Chain... at 98%
6nadRCSB PDB    PDBbind243aa, >6NAD_1|Chains... at 100%
6j1lRCSB PDB    PDBbind267aa, >6J1L_1|Chains... at 92%
6e3gRCSB PDB    PDBbind245aa, >6E3G_1|Chains... at 99%
6b33RCSB PDB    PDBbind218aa, >6B33_1|Chains... at 100%
6salRCSB PDB    PDBbind243aa, >6SAL_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g6gRCSB PDB    PDBbind13-mer
1gagRCSB PDB    PDBbind13-mer
1haaRCSB PDB    PDBbind13-mer
1hc9RCSB PDB    PDBbind13-mer
1i8hRCSB PDB    PDBbind13-mer
1j4pRCSB PDB    PDBbind13-mer
1j4qRCSB PDB    PDBbind13-mer
1juqRCSB PDB    PDBbind13-mer
1jwmRCSB PDB    PDBbind13-mer
1jwsRCSB PDB    PDBbind13-mer
1jwuRCSB PDB    PDBbind13-mer
1k3nRCSB PDB    PDBbind13-mer
1k3qRCSB PDB    PDBbind13-mer
1oebRCSB PDB    PDBbind13-mer
1opiRCSB PDB    PDBbind13-mer
1osvRCSB PDB    PDBbind13-mer
1ow6RCSB PDB    PDBbind13-mer
1ow7RCSB PDB    PDBbind13-mer
1ow8RCSB PDB    PDBbind13-mer
1p4uRCSB PDB    PDBbind13-mer
1r5vRCSB PDB    PDBbind13-mer
1r5wRCSB PDB    PDBbind13-mer
1rgjRCSB PDB    PDBbind13-mer
1sjhRCSB PDB    PDBbind13-mer
1sm3RCSB PDB    PDBbind13-mer
1thrRCSB PDB    PDBbind13-mer
1u9lRCSB PDB    PDBbind13-mer
1uefRCSB PDB    PDBbind13-mer
1yvhRCSB PDB    PDBbind13-mer
1ywhRCSB PDB    PDBbind13-mer
1zhkRCSB PDB    PDBbind13-mer
1zhlRCSB PDB    PDBbind13-mer
2a25RCSB PDB    PDBbind13-mer
2c9tRCSB PDB    PDBbind13-mer
2dwxRCSB PDB    PDBbind13-mer
2ftsRCSB PDB    PDBbind13-mer
2lasRCSB PDB    PDBbind13-mer
2lctRCSB PDB    PDBbind13-mer
2lspRCSB PDB    PDBbind13-mer
2ltoRCSB PDB    PDBbind13-mer
2lywRCSB PDB    PDBbind13-mer
2mc1RCSB PDB    PDBbind13-mer
2mkrRCSB PDB    PDBbind13-mer
2ndfRCSB PDB    PDBbind13-mer
2ndgRCSB PDB    PDBbind13-mer
2qkiRCSB PDB    PDBbind13-mer
2r0yRCSB PDB    PDBbind13-mer
2rnxRCSB PDB    PDBbind13-mer
2v87RCSB PDB    PDBbind13-mer
2vr3RCSB PDB    PDBbind13-mer
3askRCSB PDB    PDBbind13-mer
3bumRCSB PDB    PDBbind13-mer
3bunRCSB PDB    PDBbind13-mer
3buoRCSB PDB    PDBbind13-mer
3buwRCSB PDB    PDBbind13-mer
3buxRCSB PDB    PDBbind13-mer
3c3oRCSB PDB    PDBbind13-mer
3c3rRCSB PDB    PDBbind13-mer
3cojRCSB PDB    PDBbind13-mer
3e1rRCSB PDB    PDBbind13-mer
3eg6RCSB PDB    PDBbind13-mer
3emhRCSB PDB    PDBbind13-mer
3g2sRCSB PDB    PDBbind13-mer
3g2tRCSB PDB    PDBbind13-mer
3g2uRCSB PDB    PDBbind13-mer
3g2vRCSB PDB    PDBbind13-mer
3ml4RCSB PDB    PDBbind13-mer
3n5uRCSB PDB    PDBbind13-mer
3nfkRCSB PDB    PDBbind13-mer
3ntiRCSB PDB    PDBbind13-mer
3o1eRCSB PDB    PDBbind13-mer
3q5uRCSB PDB    PDBbind13-mer
3rqfRCSB PDB    PDBbind13-mer
3rqgRCSB PDB    PDBbind13-mer
3rz9RCSB PDB    PDBbind13-mer
3s7fRCSB PDB    PDBbind13-mer
3tdzRCSB PDB    PDBbind13-mer
3ui2RCSB PDB    PDBbind13-mer
4abiRCSB PDB    PDBbind13-mer
4abjRCSB PDB    PDBbind13-mer
4b9wRCSB PDB    PDBbind13-mer
4beaRCSB PDB    PDBbind13-mer
4bv2RCSB PDB    PDBbind13-mer
4f14RCSB PDB    PDBbind13-mer
4f20RCSB PDB    PDBbind13-mer
4h3qRCSB PDB    PDBbind13-mer
4ib5RCSB PDB    PDBbind13-mer
4jmgRCSB PDB    PDBbind13-mer
4jmhRCSB PDB    PDBbind13-mer
4l1uRCSB PDB    PDBbind13-mer
4m7cRCSB PDB    PDBbind13-mer
4mz5RCSB PDB    PDBbind13-mer
4mz6RCSB PDB    PDBbind13-mer
4n7hRCSB PDB    PDBbind13-mer
4po7RCSB PDB    PDBbind13-mer
4qh8RCSB PDB    PDBbind13-mer
4rmeRCSB PDB    PDBbind13-mer
4um9RCSB PDB    PDBbind13-mer
4umnRCSB PDB    PDBbind13-mer
4w4zRCSB PDB    PDBbind13-mer
4wj7RCSB PDB    PDBbind13-mer
4x3eRCSB PDB    PDBbind13-mer
4yjlRCSB PDB    PDBbind13-mer
4z0dRCSB PDB    PDBbind13-mer
4z0eRCSB PDB    PDBbind13-mer
4z0fRCSB PDB    PDBbind13-mer
5cilRCSB PDB    PDBbind13-mer
5dd0RCSB PDB    PDBbind13-mer
5dhfRCSB PDB    PDBbind13-mer
5dx3RCSB PDB    PDBbind13-mer
5dxbRCSB PDB    PDBbind13-mer
5dxeRCSB PDB    PDBbind13-mer
5dxgRCSB PDB    PDBbind13-mer
5e0mRCSB PDB    PDBbind13-mer
5eayRCSB PDB    PDBbind13-mer
5eyzRCSB PDB    PDBbind13-mer
5fyqRCSB PDB    PDBbind13-mer
5gg4RCSB PDB    PDBbind13-mer
5h1eRCSB PDB    PDBbind13-mer
5h7gRCSB PDB    PDBbind13-mer
5hyrRCSB PDB    PDBbind13-mer
5hyxRCSB PDB    PDBbind13-mer
5jr2RCSB PDB    PDBbind13-mer
5kgnRCSB PDB    PDBbind13-mer
5lgpRCSB PDB    PDBbind13-mer
5lu2RCSB PDB    PDBbind13-mer
5n8bRCSB PDB    PDBbind13-mer
5n8eRCSB PDB    PDBbind13-mer
5n8tRCSB PDB    PDBbind13-mer
5t6jRCSB PDB    PDBbind13-mer
5u6kRCSB PDB    PDBbind13-mer
5umzRCSB PDB    PDBbind13-mer
5vqiRCSB PDB    PDBbind13-mer
5wgdRCSB PDB    PDBbind13-mer
5wgqRCSB PDB    PDBbind13-mer
5yyzRCSB PDB    PDBbind13-mer
6bijRCSB PDB    PDBbind13-mer
6bilRCSB PDB    PDBbind13-mer
6binRCSB PDB    PDBbind13-mer
6birRCSB PDB    PDBbind13-mer
6bivRCSB PDB    PDBbind13-mer
6bixRCSB PDB    PDBbind13-mer
6biyRCSB PDB    PDBbind13-mer
6bnhRCSB PDB    PDBbind13-mer
6cf6RCSB PDB    PDBbind13-mer
6drtRCSB PDB    PDBbind13-mer
6e8kRCSB PDB    PDBbind13-mer
6e8mRCSB PDB    PDBbind13-mer
6o7gRCSB PDB    PDBbind13-mer
6o3yRCSB PDB    PDBbind13-mer
6nkpRCSB PDB    PDBbind13-mer
6n9tRCSB PDB    PDBbind13-mer
6n87RCSB PDB    PDBbind13-mer
6n7qRCSB PDB    PDBbind13-mer
6hy7RCSB PDB    PDBbind13-mer
6bcyRCSB PDB    PDBbind13-mer
5yy9RCSB PDB    PDBbind13-mer
5mtwRCSB PDB    PDBbind13-mer

Entry Information
PDB ID3o1d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameVitamin D3 receptor A
Ligand Name13-mer
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=1.8uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) MEDCHEMCOMM Vol. 2: pp. 424-429
Ligand Properties
Formula C56H100N19O12
Molecular Weight 1231.510
Exact Mass 1230.780
No. of atoms 187
No. of bonds 188
Polar Surface Area 520.94
LOGP Value -0.07      (Computed with XLOGP3)
-0.39      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 14
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 50
No. of Nitrogen and Oxygen Atoms: 31
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9PTN2  Q15596  
Entrez Gene IDNCBI Entrez Gene ID: 30076  10499  
ASDInformation of known allosteric effects of PDB entries

 
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