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Related entries of code: 6drt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g6gRCSB PDB    PDBbind13-mer
1gagRCSB PDB    PDBbind13-mer
1haaRCSB PDB    PDBbind13-mer
1hc9RCSB PDB    PDBbind13-mer
1i8hRCSB PDB    PDBbind13-mer
1j4pRCSB PDB    PDBbind13-mer
1j4qRCSB PDB    PDBbind13-mer
1juqRCSB PDB    PDBbind13-mer
1jwmRCSB PDB    PDBbind13-mer
1jwsRCSB PDB    PDBbind13-mer
1jwuRCSB PDB    PDBbind13-mer
1k3nRCSB PDB    PDBbind13-mer
1k3qRCSB PDB    PDBbind13-mer
1oebRCSB PDB    PDBbind13-mer
1opiRCSB PDB    PDBbind13-mer
1osvRCSB PDB    PDBbind13-mer
1ow6RCSB PDB    PDBbind13-mer
1ow7RCSB PDB    PDBbind13-mer
1ow8RCSB PDB    PDBbind13-mer
1p4uRCSB PDB    PDBbind13-mer
1r5vRCSB PDB    PDBbind13-mer
1r5wRCSB PDB    PDBbind13-mer
1rgjRCSB PDB    PDBbind13-mer
1sjhRCSB PDB    PDBbind13-mer
1sm3RCSB PDB    PDBbind13-mer
1thrRCSB PDB    PDBbind13-mer
1u9lRCSB PDB    PDBbind13-mer
1uefRCSB PDB    PDBbind13-mer
1yvhRCSB PDB    PDBbind13-mer
1ywhRCSB PDB    PDBbind13-mer
1zhkRCSB PDB    PDBbind13-mer
1zhlRCSB PDB    PDBbind13-mer
2a25RCSB PDB    PDBbind13-mer
2c9tRCSB PDB    PDBbind13-mer
2dwxRCSB PDB    PDBbind13-mer
2ftsRCSB PDB    PDBbind13-mer
2lasRCSB PDB    PDBbind13-mer
2lctRCSB PDB    PDBbind13-mer
2lspRCSB PDB    PDBbind13-mer
2ltoRCSB PDB    PDBbind13-mer
2lywRCSB PDB    PDBbind13-mer
2mc1RCSB PDB    PDBbind13-mer
2mkrRCSB PDB    PDBbind13-mer
2ndfRCSB PDB    PDBbind13-mer
2ndgRCSB PDB    PDBbind13-mer
2qkiRCSB PDB    PDBbind13-mer
2r0yRCSB PDB    PDBbind13-mer
2rnxRCSB PDB    PDBbind13-mer
2v87RCSB PDB    PDBbind13-mer
2vr3RCSB PDB    PDBbind13-mer
3askRCSB PDB    PDBbind13-mer
3bumRCSB PDB    PDBbind13-mer
3bunRCSB PDB    PDBbind13-mer
3buoRCSB PDB    PDBbind13-mer
3buwRCSB PDB    PDBbind13-mer
3buxRCSB PDB    PDBbind13-mer
3c3oRCSB PDB    PDBbind13-mer
3c3rRCSB PDB    PDBbind13-mer
3cojRCSB PDB    PDBbind13-mer
3e1rRCSB PDB    PDBbind13-mer
3eg6RCSB PDB    PDBbind13-mer
3emhRCSB PDB    PDBbind13-mer
3g2sRCSB PDB    PDBbind13-mer
3g2tRCSB PDB    PDBbind13-mer
3g2uRCSB PDB    PDBbind13-mer
3g2vRCSB PDB    PDBbind13-mer
3ml4RCSB PDB    PDBbind13-mer
3n5uRCSB PDB    PDBbind13-mer
3nfkRCSB PDB    PDBbind13-mer
3ntiRCSB PDB    PDBbind13-mer
3o1dRCSB PDB    PDBbind13-mer
3o1eRCSB PDB    PDBbind13-mer
3q5uRCSB PDB    PDBbind13-mer
3rqfRCSB PDB    PDBbind13-mer
3rqgRCSB PDB    PDBbind13-mer
3rz9RCSB PDB    PDBbind13-mer
3s7fRCSB PDB    PDBbind13-mer
3tdzRCSB PDB    PDBbind13-mer
3ui2RCSB PDB    PDBbind13-mer
4abiRCSB PDB    PDBbind13-mer
4abjRCSB PDB    PDBbind13-mer
4b9wRCSB PDB    PDBbind13-mer
4beaRCSB PDB    PDBbind13-mer
4bv2RCSB PDB    PDBbind13-mer
4f14RCSB PDB    PDBbind13-mer
4f20RCSB PDB    PDBbind13-mer
4h3qRCSB PDB    PDBbind13-mer
4ib5RCSB PDB    PDBbind13-mer
4jmgRCSB PDB    PDBbind13-mer
4jmhRCSB PDB    PDBbind13-mer
4l1uRCSB PDB    PDBbind13-mer
4m7cRCSB PDB    PDBbind13-mer
4mz5RCSB PDB    PDBbind13-mer
4mz6RCSB PDB    PDBbind13-mer
4n7hRCSB PDB    PDBbind13-mer
4po7RCSB PDB    PDBbind13-mer
4qh8RCSB PDB    PDBbind13-mer
4rmeRCSB PDB    PDBbind13-mer
4um9RCSB PDB    PDBbind13-mer
4umnRCSB PDB    PDBbind13-mer
4w4zRCSB PDB    PDBbind13-mer
4wj7RCSB PDB    PDBbind13-mer
4x3eRCSB PDB    PDBbind13-mer
4yjlRCSB PDB    PDBbind13-mer
4z0dRCSB PDB    PDBbind13-mer
4z0eRCSB PDB    PDBbind13-mer
4z0fRCSB PDB    PDBbind13-mer
5cilRCSB PDB    PDBbind13-mer
5dd0RCSB PDB    PDBbind13-mer
5dhfRCSB PDB    PDBbind13-mer
5dx3RCSB PDB    PDBbind13-mer
5dxbRCSB PDB    PDBbind13-mer
5dxeRCSB PDB    PDBbind13-mer
5dxgRCSB PDB    PDBbind13-mer
5e0mRCSB PDB    PDBbind13-mer
5eayRCSB PDB    PDBbind13-mer
5eyzRCSB PDB    PDBbind13-mer
5fyqRCSB PDB    PDBbind13-mer
5gg4RCSB PDB    PDBbind13-mer
5h1eRCSB PDB    PDBbind13-mer
5h7gRCSB PDB    PDBbind13-mer
5hyrRCSB PDB    PDBbind13-mer
5hyxRCSB PDB    PDBbind13-mer
5jr2RCSB PDB    PDBbind13-mer
5kgnRCSB PDB    PDBbind13-mer
5lgpRCSB PDB    PDBbind13-mer
5lu2RCSB PDB    PDBbind13-mer
5n8bRCSB PDB    PDBbind13-mer
5n8eRCSB PDB    PDBbind13-mer
5n8tRCSB PDB    PDBbind13-mer
5t6jRCSB PDB    PDBbind13-mer
5u6kRCSB PDB    PDBbind13-mer
5umzRCSB PDB    PDBbind13-mer
5vqiRCSB PDB    PDBbind13-mer
5wgdRCSB PDB    PDBbind13-mer
5wgqRCSB PDB    PDBbind13-mer
5yyzRCSB PDB    PDBbind13-mer
6bijRCSB PDB    PDBbind13-mer
6bilRCSB PDB    PDBbind13-mer
6binRCSB PDB    PDBbind13-mer
6birRCSB PDB    PDBbind13-mer
6bivRCSB PDB    PDBbind13-mer
6bixRCSB PDB    PDBbind13-mer
6biyRCSB PDB    PDBbind13-mer
6bnhRCSB PDB    PDBbind13-mer
6cf6RCSB PDB    PDBbind13-mer
6e8kRCSB PDB    PDBbind13-mer
6e8mRCSB PDB    PDBbind13-mer
6o7gRCSB PDB    PDBbind13-mer
6o3yRCSB PDB    PDBbind13-mer
6nkpRCSB PDB    PDBbind13-mer
6n9tRCSB PDB    PDBbind13-mer
6n87RCSB PDB    PDBbind13-mer
6n7qRCSB PDB    PDBbind13-mer
6hy7RCSB PDB    PDBbind13-mer
6bcyRCSB PDB    PDBbind13-mer
5yy9RCSB PDB    PDBbind13-mer
5mtwRCSB PDB    PDBbind13-mer
Entry Information
PDB ID6drt
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA polymerase clamp
Ligand Name13-mer
EC.Number E.C.-.-.-.-
Resolution 2.12(Å)
Affinity (Kd/Ki/IC50)Kd=10.7uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nucleic Acids Res. Vol. 46: pp. 10474-10488
Ligand Properties
Formula C48H68N9O16
Molecular Weight 1027.100
Exact Mass 1026.480
No. of atoms 141
No. of bonds 142
Polar Surface Area 409.64
LOGP Value 3.36      (Computed with XLOGP3)
0.73      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 9
No. of Hydrogen Bond Acceptors: 16
No. of Rotatable Bonds: 36
No. of Nitrogen and Oxygen Atoms: 25
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00970  P04525  
Entrez Gene IDNCBI Entrez Gene ID: 1258680  1258821  
ASDInformation of known allosteric effects of PDB entries
 
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