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Related entries of code: 3p2k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3p2eRCSB PDB    PDBbind225aa, >3P2E_1|Chains... *
3pb3RCSB PDB    PDBbind225aa, >3PB3_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1nw5RCSB PDB    PDBbindSAM
2admRCSB PDB    PDBbindSAM
2h21RCSB PDB    PDBbindSAM
2uyqRCSB PDB    PDBbindSAM
2zifRCSB PDB    PDBbindSAM
3lcvRCSB PDB    PDBbindSAM
3r24RCSB PDB    PDBbindSAM
4bupRCSB PDB    PDBbindSAM
4fakRCSB PDB    PDBbindSAM
4pghRCSB PDB    PDBbindSAM
4ymgRCSB PDB    PDBbindSAM
5bw4RCSB PDB    PDBbindSAM
5ergRCSB PDB    PDBbindSAM
5h5fRCSB PDB    PDBbindSAM
5hfjRCSB PDB    PDBbindSAM
5il1RCSB PDB    PDBbindSAM
5kvaRCSB PDB    PDBbindSAM
5twjRCSB PDB    PDBbindSAM
6bm5RCSB PDB    PDBbindSAM
6emuRCSB PDB    PDBbindSAM
6iftRCSB PDB    PDBbindSAM
5wyqRCSB PDB    PDBbindSAM
Entry Information
PDB ID3p2k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name16S rRNA methylase(NpmA)
Ligand NameSAM
EC.Number E.C.-.-.-.-
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=20uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Nucleic Acids Res.Vol. 39: pp. 1903-1918
Ligand Properties
Formula C15H24N6O5S
Molecular Weight 400.453
Exact Mass 400.153
No. of atoms 51
No. of bonds 53
Polar Surface Area 209.55
LOGP Value -3.46      (Computed with XLOGP3)
-1.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A8C927  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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