Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5wyq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6joeRCSB PDB    PDBbind269aa, >6JOE_1|Chains... at 100%
6jkiRCSB PDB    PDBbind250aa, >6JKI_1|Chains... at 99%
6afkRCSB PDB    PDBbind269aa, >6AFK_1|Chains... at 100%
5zhnRCSB PDB    PDBbind269aa, >5ZHN_1|Chains... at 100%
5zhmRCSB PDB    PDBbind269aa, >5ZHM_1|Chains... *
5wyrRCSB PDB    PDBbind248aa, >5WYR_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1nw5RCSB PDB    PDBbindSAM
2admRCSB PDB    PDBbindSAM
2h21RCSB PDB    PDBbindSAM
2uyqRCSB PDB    PDBbindSAM
2zifRCSB PDB    PDBbindSAM
3lcvRCSB PDB    PDBbindSAM
3p2kRCSB PDB    PDBbindSAM
3r24RCSB PDB    PDBbindSAM
4bupRCSB PDB    PDBbindSAM
4fakRCSB PDB    PDBbindSAM
4pghRCSB PDB    PDBbindSAM
4ymgRCSB PDB    PDBbindSAM
5bw4RCSB PDB    PDBbindSAM
5ergRCSB PDB    PDBbindSAM
5h5fRCSB PDB    PDBbindSAM
5hfjRCSB PDB    PDBbindSAM
5il1RCSB PDB    PDBbindSAM
5kvaRCSB PDB    PDBbindSAM
5twjRCSB PDB    PDBbindSAM
6bm5RCSB PDB    PDBbindSAM
6emuRCSB PDB    PDBbindSAM
6iftRCSB PDB    PDBbindSAM
Entry Information
PDB ID5wyq
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NametRNA (guanine-N(1)-)-methyltransferase
Ligand NameSAM
EC.Number E.C.2.1.1.228
Resolution 2.16(Å)
Affinity (Kd/Ki/IC50)Kd=14.4uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Rna Vol. : pp. -
Ligand Properties
Formula C15H24N6O5S
Molecular Weight 400.453
Exact Mass 400.153
No. of atoms 51
No. of bonds 53
Polar Surface Area 209.55
LOGP Value -3.46      (Computed with XLOGP3)
-1.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q02RL6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com