Browse entries in the PDBbind-CN Database

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Related entries of code: 5wyr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6joeRCSB PDB    PDBbind269aa, >6JOE_1|Chains... at 100%
6jkiRCSB PDB    PDBbind250aa, >6JKI_1|Chains... at 99%
6afkRCSB PDB    PDBbind269aa, >6AFK_1|Chains... at 100%
5zhnRCSB PDB    PDBbind269aa, >5ZHN_1|Chains... at 100%
5zhmRCSB PDB    PDBbind269aa, >5ZHM_1|Chains... *
5wyqRCSB PDB    PDBbind248aa, >5WYQ_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6jkiRCSB PDB    PDBbindDFG

Entry Information
PDB ID5wyr
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NametRNA (guanine-N(1)-)-methyltransferase
Ligand NameDFG
EC.Number E.C.2.1.1.228
Resolution 2.45(Å)
Affinity (Kd/Ki/IC50)Kd=0.41uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Rna Vol. : pp. -
Ligand Properties
Formula C15H25N7O5
Molecular Weight 383.403
Exact Mass 383.192
No. of atoms 52
No. of bonds 54
Polar Surface Area 211.89
LOGP Value -4.28      (Computed with XLOGP3)
-2.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q02RL6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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