Browse entries in the PDBbind-CN Database

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Related entries of code: 3pz1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3c72RCSB PDB    PDBbind331aa, >3C72_2|Chain... at 95%
3dstRCSB PDB    PDBbind331aa, >3DST_2|Chain... at 95%
3dsuRCSB PDB    PDBbind331aa, >3DSU_2|Chain... at 95%
3hxbRCSB PDB    PDBbind331aa, >3HXB_2|Chain... at 95%
3hxcRCSB PDB    PDBbind331aa, >3HXC_2|Chain... at 95%
3hxdRCSB PDB    PDBbind331aa, >3HXD_2|Chain... at 95%
3hxeRCSB PDB    PDBbind331aa, >3HXE_2|Chain... at 95%
3hxfRCSB PDB    PDBbind331aa, >3HXF_2|Chain... at 95%
3pz2RCSB PDB    PDBbind330aa, >3PZ2_2|Chain... at 95%
3pz3RCSB PDB    PDBbind330aa, >3PZ3_2|Chain... at 95%
4ehmRCSB PDB    PDBbind330aa, >4EHM_2|Chain... at 95%
4gtsRCSB PDB    PDBbind330aa, >4GTS_2|Chain... at 95%
4gttRCSB PDB    PDBbind330aa, >4GTT_2|Chain... at 95%
4gtvRCSB PDB    PDBbind330aa, >4GTV_2|Chain... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3pz2RCSB PDB    PDBbind3PZ
3pz4RCSB PDB    PDBbind3PZ
Entry Information
PDB ID3pz1
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRabGGTase
Ligand Name3PZ
EC.Number E.C.2.5.1.60
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)IC50=724nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Angew.Chem.Int.Ed.Engl. Vol. 50: pp. 4957-4961
Ligand Properties
Formula C29H29N5O3S
Molecular Weight 527.637
Exact Mass 527.199
No. of atoms 67
No. of bonds 71
Polar Surface Area 99.84
LOGP Value 3.79      (Computed with XLOGP3)
5.21      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P53612  Q08602  
Entrez Gene IDNCBI Entrez Gene ID: 19352  58983  
ASDInformation of known allosteric effects of PDB entries
 
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