Browse entries in the PDBbind-CN Database

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Related entries of code: 3tv8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3gxtRCSB PDB    PDBbind398aa, >3GXT_1|Chains... at 99%
3s5yRCSB PDB    PDBbind398aa, >3S5Y_1|Chains... at 99%
4nxsRCSB PDB    PDBbind398aa, >4NXS_1|Chains... at 99%
6ibkRCSB PDB    PDBbind398aa, >6IBK_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3s5yRCSB PDB    PDBbindDGJ
3thdRCSB PDB    PDBbindDGJ
4cu8RCSB PDB    PDBbindDGJ
4d1jRCSB PDB    PDBbindDGJ
4do5RCSB PDB    PDBbindDGJ
4fnsRCSB PDB    PDBbindDGJ
4ufmRCSB PDB    PDBbindDGJ
Entry Information
PDB ID3tv8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman alpha-Galactosidase
Ligand NameDGJ
EC.Number E.C.3.2.1.22
Resolution 2.64(Å)
Affinity (Kd/Ki/IC50)IC50=0.07uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2005) J. Med. Chem., Vol.48, pp.2036-2044
Ligand Properties
Formula C6H14NO4
Molecular Weight 164.180
Exact Mass 164.092
No. of atoms 25
No. of bonds 25
Polar Surface Area 97.53
LOGP Value -2.35      (Computed with XLOGP3)
-2.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P06280  
Entrez Gene IDNCBI Entrez Gene ID: 2717  
ASDInformation of known allosteric effects of PDB entries
 
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