Browse entries in the PDBbind-CN Database

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Related entries of code: 4d1j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3s5yRCSB PDB    PDBbindDGJ
3thdRCSB PDB    PDBbindDGJ
3tv8RCSB PDB    PDBbindDGJ
4cu8RCSB PDB    PDBbindDGJ
4do5RCSB PDB    PDBbindDGJ
4fnsRCSB PDB    PDBbindDGJ
4ufmRCSB PDB    PDBbindDGJ

Entry Information
PDB ID4d1j
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGH35 beta-galactosidase Bgl35A from Cellvibrio japonicas
Ligand NameDGJ
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=485nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Mol.Microbiol. Vol. 94: pp. 418-433
Ligand Properties
Formula C6H14NO4
Molecular Weight 164.180
Exact Mass 164.092
No. of atoms 25
No. of bonds 25
Polar Surface Area 97.53
LOGP Value -2.35      (Computed with XLOGP3)
-2.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B3PBE0  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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