Browse entries in the PDBbind-CN Database

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Related entries of code: 3ud7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1djsRCSB PDB    PDBbind135aa, >1DJS_2|Chain... at 100%
1ry7RCSB PDB    PDBbind155aa, >1RY7_1|Chain... *
3oj2RCSB PDB    PDBbind155aa, >3OJ2_1|Chains... at 100%
3ojmRCSB PDB    PDBbind155aa, >3OJM_1|Chain... at 100%
3ud8RCSB PDB    PDBbind141aa, >3UD8_1|Chains... at 99%
3ud9RCSB PDB    PDBbind141aa, >3UD9_1|Chains... at 99%
3udaRCSB PDB    PDBbind141aa, >3UDA_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ud7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHeparin-binding growth factor 1
Ligand NameGNS-IDY
EC.Number E.C.-.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=18.1uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Am.Chem.Soc. Vol. 134: pp. 20722-20727
Ligand Properties
Formula C13H27NO17S2
Molecular Weight 533.480
Exact Mass 533.072
No. of atoms 60
No. of bonds 61
Polar Surface Area 348.38
LOGP Value -3.95      (Computed with XLOGP3)
-2.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P05230  
Entrez Gene IDNCBI Entrez Gene ID: 2246  
ASDInformation of known allosteric effects of PDB entries

 
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