Browse entries in the PDBbind-CN Database

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Related entries of code: 3ud9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1djsRCSB PDB    PDBbind135aa, >1DJS_2|Chain... at 100%
1ry7RCSB PDB    PDBbind155aa, >1RY7_1|Chain... *
3oj2RCSB PDB    PDBbind155aa, >3OJ2_1|Chains... at 100%
3ojmRCSB PDB    PDBbind155aa, >3OJM_1|Chain... at 100%
3ud7RCSB PDB    PDBbind141aa, >3UD7_1|Chains... at 99%
3ud8RCSB PDB    PDBbind141aa, >3UD8_1|Chains... at 99%
3udaRCSB PDB    PDBbind141aa, >3UDA_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4oefRCSB PDB    PDBbindSGN-IDY

Entry Information
PDB ID3ud9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHeparin-binding growth factor 1
Ligand NameSGN-IDY
EC.Number E.C.-.-.-.-
Resolution 2.34(Å)
Affinity (Kd/Ki/IC50)Kd=21.2uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Am.Chem.Soc. Vol. 134: pp. 20722-20727
Ligand Properties
Formula C13H29NO20S3
Molecular Weight 615.559
Exact Mass 615.045
No. of atoms 66
No. of bonds 67
Polar Surface Area 423.37
LOGP Value -4.80      (Computed with XLOGP3)
-1.20      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 21
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P05230  
Entrez Gene IDNCBI Entrez Gene ID: 2246  
ASDInformation of known allosteric effects of PDB entries

 
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