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Related entries of code: 3udv
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ex8RCSB PDB    PDBbind158aa, >1EX8_1|Chain... at 100%
1ru1RCSB PDB    PDBbind152aa, >1RU1_1|Chains... at 99%
1ru2RCSB PDB    PDBbind152aa, >1RU2_1|Chain... at 99%
1tmmRCSB PDB    PDBbind158aa, >1TMM_1|Chains... at 99%
3ud5RCSB PDB    PDBbind158aa, >3UD5_1|Chain... at 100%
4f7vRCSB PDB    PDBbind158aa, >4F7V_1|Chain... at 100%
4m5gRCSB PDB    PDBbind162aa, >4M5G_1|Chain... *
4m5hRCSB PDB    PDBbind162aa, >4M5H_1|Chain... at 100%
4m5iRCSB PDB    PDBbind162aa, >4M5I_1|Chain... at 100%
4m5jRCSB PDB    PDBbind162aa, >4M5J_1|Chain... at 100%
4m5kRCSB PDB    PDBbind162aa, >4M5K_1|Chain... at 100%
4m5lRCSB PDB    PDBbind162aa, >4M5L_1|Chain... at 100%
4m5mRCSB PDB    PDBbind162aa, >4M5M_1|Chain... at 100%
4m5nRCSB PDB    PDBbind162aa, >4M5N_1|Chains... at 100%
5etkRCSB PDB    PDBbind162aa, >5ETK_1|Chain... at 99%
5etlRCSB PDB    PDBbind162aa, >5ETL_1|Chains... at 99%
5etmRCSB PDB    PDBbind162aa, >5ETM_1|Chain... at 99%
5etnRCSB PDB    PDBbind162aa, >5ETN_1|Chain... at 99%
5etoRCSB PDB    PDBbind162aa, >5ETO_1|Chain... at 99%
5etpRCSB PDB    PDBbind162aa, >5ETP_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3udv
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Ligand NameJ1C
EC.Number E.C.2.7.6.3
Resolution 1.88(Å)
Affinity (Kd/Ki/IC50)Kd=2.55uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Bioorg.Med.Chem. Vol. 20: pp. 47-57
Ligand Properties
Formula C26H38N12O5S
Molecular Weight 630.722
Exact Mass 630.281
No. of atoms 82
No. of bonds 87
Polar Surface Area 271.96
LOGP Value -1.09      (Computed with XLOGP3)
-1.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P26281  
Entrez Gene IDNCBI Entrez Gene ID: 948792  
ASDInformation of known allosteric effects of PDB entries
 
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