Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4m5m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ex8RCSB PDB    PDBbind158aa, >1EX8_1|Chain... at 100%
1ru1RCSB PDB    PDBbind152aa, >1RU1_1|Chains... at 99%
1ru2RCSB PDB    PDBbind152aa, >1RU2_1|Chain... at 99%
1tmmRCSB PDB    PDBbind158aa, >1TMM_1|Chains... at 99%
3ud5RCSB PDB    PDBbind158aa, >3UD5_1|Chain... at 100%
3udvRCSB PDB    PDBbind158aa, >3UDV_1|Chain... at 100%
4f7vRCSB PDB    PDBbind158aa, >4F7V_1|Chain... at 100%
4m5gRCSB PDB    PDBbind162aa, >4M5G_1|Chain... *
4m5hRCSB PDB    PDBbind162aa, >4M5H_1|Chain... at 100%
4m5iRCSB PDB    PDBbind162aa, >4M5I_1|Chain... at 100%
4m5jRCSB PDB    PDBbind162aa, >4M5J_1|Chain... at 100%
4m5kRCSB PDB    PDBbind162aa, >4M5K_1|Chain... at 100%
4m5lRCSB PDB    PDBbind162aa, >4M5L_1|Chain... at 100%
4m5nRCSB PDB    PDBbind162aa, >4M5N_1|Chains... at 100%
5etkRCSB PDB    PDBbind162aa, >5ETK_1|Chain... at 99%
5etlRCSB PDB    PDBbind162aa, >5ETL_1|Chains... at 99%
5etmRCSB PDB    PDBbind162aa, >5ETM_1|Chain... at 99%
5etnRCSB PDB    PDBbind162aa, >5ETN_1|Chain... at 99%
5etoRCSB PDB    PDBbind162aa, >5ETO_1|Chain... at 99%
5etpRCSB PDB    PDBbind162aa, >5ETP_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3jqaRCSB PDB    PDBbindDX4
Entry Information
PDB ID4m5m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
Ligand NameDX4
EC.Number E.C.2.7.6.3
Resolution 1.12(Å)
Affinity (Kd/Ki/IC50)Kd=18uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Bioorg.Med.Chem. Vol. 22: pp. 2157-2165
Ligand Properties
Formula C5H6N5S
Molecular Weight 168.200
Exact Mass 168.034
No. of atoms 17
No. of bonds 18
Polar Surface Area 116.72
LOGP Value 0.81      (Computed with XLOGP3)
0.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P26281  
Entrez Gene IDNCBI Entrez Gene ID: 948792  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com