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Related entries of code: 3v3b
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1bxlRCSB PDB    PDBbind16-mer
1dpuRCSB PDB    PDBbind16-mer
1dxpRCSB PDB    PDBbind16-mer
1g1eRCSB PDB    PDBbind16-mer
1j19RCSB PDB    PDBbind16-mer
1ok7RCSB PDB    PDBbind16-mer
1pmxRCSB PDB    PDBbind16-mer
1r17RCSB PDB    PDBbind16-mer
1s5qRCSB PDB    PDBbind16-mer
1sjeRCSB PDB    PDBbind16-mer
1t2vRCSB PDB    PDBbind16-mer
1u8tRCSB PDB    PDBbind16-mer
1utiRCSB PDB    PDBbind16-mer
1vyjRCSB PDB    PDBbind16-mer
1y3aRCSB PDB    PDBbind16-mer
2b2vRCSB PDB    PDBbind16-mer
2fluRCSB PDB    PDBbind16-mer
2fx7RCSB PDB    PDBbind16-mer
2gphRCSB PDB    PDBbind16-mer
2ivzRCSB PDB    PDBbind16-mer
2k3wRCSB PDB    PDBbind16-mer
2kohRCSB PDB    PDBbind16-mer
2kvmRCSB PDB    PDBbind16-mer
2lcsRCSB PDB    PDBbind16-mer
2lskRCSB PDB    PDBbind16-mer
2lsrRCSB PDB    PDBbind16-mer
2mg5RCSB PDB    PDBbind16-mer
2mpmRCSB PDB    PDBbind16-mer
2mpsRCSB PDB    PDBbind16-mer
2n1gRCSB PDB    PDBbind16-mer
3ehtRCSB PDB    PDBbind16-mer
3g5vRCSB PDB    PDBbind16-mer
3g5yRCSB PDB    PDBbind16-mer
3g7lRCSB PDB    PDBbind16-mer
3k48RCSB PDB    PDBbind16-mer
3nflRCSB PDB    PDBbind16-mer
3oe0RCSB PDB    PDBbind16-mer
3tduRCSB PDB    PDBbind16-mer
3twrRCSB PDB    PDBbind16-mer
3twsRCSB PDB    PDBbind16-mer
3twuRCSB PDB    PDBbind16-mer
3twvRCSB PDB    PDBbind16-mer
3twwRCSB PDB    PDBbind16-mer
3twxRCSB PDB    PDBbind16-mer
3zqiRCSB PDB    PDBbind16-mer
4a2aRCSB PDB    PDBbind16-mer
4a7jRCSB PDB    PDBbind16-mer
4eduRCSB PDB    PDBbind16-mer
4hs6RCSB PDB    PDBbind16-mer
4hs8RCSB PDB    PDBbind16-mer
4is6RCSB PDB    PDBbind16-mer
4j8rRCSB PDB    PDBbind16-mer
4l3oRCSB PDB    PDBbind16-mer
4nufRCSB PDB    PDBbind16-mer
4odkRCSB PDB    PDBbind16-mer
4odlRCSB PDB    PDBbind16-mer
4odmRCSB PDB    PDBbind16-mer
4odpRCSB PDB    PDBbind16-mer
4odqRCSB PDB    PDBbind16-mer
4pz5RCSB PDB    PDBbind16-mer
4qq4RCSB PDB    PDBbind16-mer
4tzmRCSB PDB    PDBbind16-mer
4tznRCSB PDB    PDBbind16-mer
4u2wRCSB PDB    PDBbind16-mer
4ud7RCSB PDB    PDBbind16-mer
4ue1RCSB PDB    PDBbind16-mer
4wciRCSB PDB    PDBbind16-mer
4wy7RCSB PDB    PDBbind16-mer
4yhpRCSB PDB    PDBbind16-mer
4zduRCSB PDB    PDBbind16-mer
5etaRCSB PDB    PDBbind16-mer
5hhxRCSB PDB    PDBbind16-mer
5iayRCSB PDB    PDBbind16-mer
5icxRCSB PDB    PDBbind16-mer
5iy4RCSB PDB    PDBbind16-mer
5klrRCSB PDB    PDBbind16-mer
5kltRCSB PDB    PDBbind16-mer
5lvfRCSB PDB    PDBbind16-mer
5ly3RCSB PDB    PDBbind16-mer
5m9dRCSB PDB    PDBbind16-mer
5mykRCSB PDB    PDBbind16-mer
5myxRCSB PDB    PDBbind16-mer
5ninRCSB PDB    PDBbind16-mer
5njxRCSB PDB    PDBbind16-mer
5o4yRCSB PDB    PDBbind16-mer
5u2jRCSB PDB    PDBbind16-mer
5v1yRCSB PDB    PDBbind16-mer
5v6yRCSB PDB    PDBbind16-mer
5wa4RCSB PDB    PDBbind16-mer
5wblRCSB PDB    PDBbind16-mer
5wqdRCSB PDB    PDBbind16-mer
5y7wRCSB PDB    PDBbind16-mer
6bhiRCSB PDB    PDBbind16-mer
6g84RCSB PDB    PDBbind16-mer
6g85RCSB PDB    PDBbind16-mer
6g86RCSB PDB    PDBbind16-mer
6h0bRCSB PDB    PDBbind16-mer
6qszRCSB PDB    PDBbind16-mer
6pi7RCSB PDB    PDBbind16-mer
6me1RCSB PDB    PDBbind16-mer
6d08RCSB PDB    PDBbind16-mer
6d07RCSB PDB    PDBbind16-mer
5zmlRCSB PDB    PDBbind16-mer
5w4eRCSB PDB    PDBbind16-mer
6tyzRCSB PDB    PDBbind16-mer
Entry Information
PDB ID3v3b
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE3 ubiquitin-protein ligase Mdm2
Ligand Name16-mer
EC.Number E.C.6.3.2
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=55nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Am.Chem.Soc. Vol. 134: pp. 103-106
Ligand Properties
Formula C82H130N20O18
Molecular Weight 1684.030
Exact Mass 1682.990
No. of atoms 250
No. of bonds 253
Polar Surface Area 645.44
LOGP Value 2.58      (Computed with XLOGP3)
4.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 18
No. of Hydrogen Bond Acceptors: 18
No. of Rotatable Bonds: 39
No. of Nitrogen and Oxygen Atoms: 38
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q00987  
Entrez Gene IDNCBI Entrez Gene ID: 4193  
ASDInformation of known allosteric effects of PDB entries
 
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