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Related entries of code: 3zm5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2am1RCSB PDB    PDBbind454aa, >2AM1_1|Chain... at 100%
2am2RCSB PDB    PDBbind454aa, >2AM2_1|Chain... at 100%
3zm6RCSB PDB    PDBbind465aa, >3ZM6_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3zm5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
Ligand NameIGM
EC.Number E.C.6.3.2.10
Resolution 2.94(Å)
Affinity (Kd/Ki/IC50)IC50=0.18uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Eur.J.Med.Chem. Vol. 66C: pp. 32
Ligand Properties
Formula C26H25Cl2N4O5S2
Molecular Weight 608.536
Exact Mass 607.064
No. of atoms 64
No. of bonds 68
Polar Surface Area 160.79
LOGP Value 4.12      (Computed with XLOGP3)
5.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8DNV6  
Entrez Gene IDNCBI Entrez Gene ID: 60234486  
ASDInformation of known allosteric effects of PDB entries
 
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