Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4ci2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ci1RCSB PDB    PDBbind469aa, >4CI1_2|Chain... *
4ci3RCSB PDB    PDBbind469aa, >4CI3_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4ci2
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman DDB1 and CRBN E3 ubiquitin ligase complex
Ligand NameLVY
EC.Number E.C.-.-.-.-
Resolution 2.95(Å)
Affinity (Kd/Ki/IC50)Kd=177.8nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Nature Vol. 512: pp. 49-54
Ligand Properties
Formula C13H13N3O3
Molecular Weight 259.261
Exact Mass 259.096
No. of atoms 32
No. of bonds 34
Polar Surface Area 92.5
LOGP Value -0.50      (Computed with XLOGP3)
0.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0CF65  Q16531  
Entrez Gene IDNCBI Entrez Gene ID: 1642  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com