Browse entries in the PDBbind-CN Database

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Related entries of code: 4d62
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4d63RCSB PDB    PDBbind187aa, >4D63_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2qwbRCSB PDB    PDBbindSIA
2zg1RCSB PDB    PDBbindSIA
2zg3RCSB PDB    PDBbindSIA
3qndRCSB PDB    PDBbindSIA
4d63RCSB PDB    PDBbindSIA
4nrkRCSB PDB    PDBbindSIA
4nrlRCSB PDB    PDBbindSIA
4x11RCSB PDB    PDBbindSIA
6er3RCSB PDB    PDBbindSIA
6er4RCSB PDB    PDBbindSIA
6g47RCSB PDB    PDBbindSIA
Entry Information
PDB ID4d62
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namecarboxy-terminal domain of the turkey type 3 siadenovirus fibre, TAdV-3 avirulent form
Ligand NameSIA
EC.Number E.C.-.-.-.-
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=3.64mM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Plos One Vol. 10: pp. 39339
Ligand Properties
Formula C11H19NO9
Molecular Weight 309.270
Exact Mass 309.106
No. of atoms 40
No. of bonds 40
Polar Surface Area 176.78
LOGP Value -2.58      (Computed with XLOGP3)
-3.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2TLC1  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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