Browse entries in the PDBbind-CN Database

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Related entries of code: 4ibj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3l25RCSB PDB    PDBbind129aa, >3L25_1|Chains... *
4ibbRCSB PDB    PDBbind129aa, >4IBB_1|Chains... at 100%
4ibcRCSB PDB    PDBbind129aa, >4IBC_1|Chains... at 100%
4ibdRCSB PDB    PDBbind129aa, >4IBD_1|Chains... at 100%
4ibeRCSB PDB    PDBbind129aa, >4IBE_1|Chains... at 100%
4ibfRCSB PDB    PDBbind129aa, >4IBF_1|Chains... at 100%
4ibgRCSB PDB    PDBbind129aa, >4IBG_1|Chains... at 100%
4ibiRCSB PDB    PDBbind129aa, >4IBI_1|Chains... at 100%
4ibkRCSB PDB    PDBbind129aa, >4IBK_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4ibj
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePolymerase cofactor Ebola virus VP35
Ligand Name1D9
EC.Number E.C.-.-.-.-
Resolution 1.54(Å)
Affinity (Kd/Ki/IC50)Kd=47.0uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Mol.Biol. Vol. 426: pp. 2045-2058
Ligand Properties
Formula C26H15F6NO5
Molecular Weight 535.391
Exact Mass 535.085
No. of atoms 53
No. of bonds 56
Polar Surface Area 94.91
LOGP Value 6.93      (Computed with XLOGP3)
6.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q05127  
Entrez Gene IDNCBI Entrez Gene ID: 911827  
ASDInformation of known allosteric effects of PDB entries
 
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