Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4k5m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ebhRCSB PDB    PDBbind889aa, >3EBH_1|Chain... at 100%
3ebiRCSB PDB    PDBbind890aa, >3EBI_1|Chain... at 100%
3q43RCSB PDB    PDBbind891aa, >3Q43_1|Chain... at 99%
3q44RCSB PDB    PDBbind891aa, >3Q44_1|Chain... at 99%
3t8vRCSB PDB    PDBbind895aa, >3T8V_1|Chain... at 99%
4k5lRCSB PDB    PDBbind898aa, >4K5L_1|Chain... at 99%
4k5nRCSB PDB    PDBbind895aa, >4K5N_1|Chain... at 99%
4k5oRCSB PDB    PDBbind895aa, >4K5O_1|Chain... at 99%
4k5pRCSB PDB    PDBbind895aa, >4K5P_1|Chain... at 99%
4r5tRCSB PDB    PDBbind896aa, >4R5T_1|Chain... at 99%
4r5vRCSB PDB    PDBbind895aa, >4R5V_1|Chain... at 99%
4r5xRCSB PDB    PDBbind903aa, >4R5X_1|Chain... *
4zqtRCSB PDB    PDBbind889aa, >4ZQT_1|Chain... at 100%
4zw3RCSB PDB    PDBbind890aa, >4ZW3_1|Chain... at 100%
4zw5RCSB PDB    PDBbind890aa, >4ZW5_1|Chain... at 100%
4zw6RCSB PDB    PDBbind890aa, >4ZW6_1|Chain... at 100%
4zw7RCSB PDB    PDBbind890aa, >4ZW7_1|Chain... at 100%
4zw8RCSB PDB    PDBbind890aa, >4ZW8_1|Chain... at 100%
4zx3RCSB PDB    PDBbind890aa, >4ZX3_1|Chain... at 100%
4zx4RCSB PDB    PDBbind890aa, >4ZX4_1|Chain... at 100%
4zx5RCSB PDB    PDBbind890aa, >4ZX5_1|Chain... at 100%
4zx6RCSB PDB    PDBbind890aa, >4ZX6_1|Chain... at 100%
6ea1RCSB PDB    PDBbind889aa, >6EA1_1|Chain... at 100%
6ea2RCSB PDB    PDBbind889aa, >6EA2_1|Chain... at 100%
6eaaRCSB PDB    PDBbind889aa, >6EAA_1|Chain... at 100%
6eabRCSB PDB    PDBbind889aa, >6EAB_1|Chain... at 100%
6ee3RCSB PDB    PDBbind889aa, >6EE3_1|Chain... at 100%
6ee4RCSB PDB    PDBbind889aa, >6EE4_1|Chain... at 100%
6ee6RCSB PDB    PDBbind889aa, >6EE6_1|Chain... at 100%
6eedRCSB PDB    PDBbind889aa, >6EED_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4k5m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameM1 family aminopeptidase
Ligand Name1OV
EC.Number E.C.3.4.11
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Ki=193uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) J.Med.Chem. Vol. 56: pp. 5213-5217
Ligand Properties
Formula C5H18N4O3P
Molecular Weight 213.195
Exact Mass 213.112
No. of atoms 31
No. of bonds 30
Polar Surface Area 165.56
LOGP Value -3.55      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O96935  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com