Browse entries in the PDBbind-CN Database

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Related entries of code: 4mrd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4mreRCSB PDB    PDBbind150aa, >4MRE_1|Chain... *
4mrfRCSB PDB    PDBbind150aa, >4MRF_1|Chain... at 100%
4mrgRCSB PDB    PDBbind150aa, >4MRG_1|Chain... at 100%
4mrhRCSB PDB    PDBbind150aa, >4MRH_1|Chain... at 100%
4np2RCSB PDB    PDBbind150aa, >4NP2_1|Chain... at 100%
4np3RCSB PDB    PDBbind150aa, >4NP3_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4mrd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemurine cd44 hyaluronan binding domain
Ligand NameNAG-BDP
EC.Number E.C.-.-.-.-
Resolution 2.55(Å)
Affinity (Kd/Ki/IC50)Kd=428uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Med.Chem. Vol. 57: pp. 2714-2725
Ligand Properties
Formula C28H44N2O22
Molecular Weight 760.649
Exact Mass 760.239
No. of atoms 96
No. of bonds 99
Polar Surface Area 379.48
LOGP Value -5.14      (Computed with XLOGP3)
-7.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 11
No. of Hydrogen Bond Acceptors: 15
No. of Rotatable Bonds: 21
No. of Nitrogen and Oxygen Atoms: 24
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P15379  
Entrez Gene IDNCBI Entrez Gene ID: 12505  
ASDInformation of known allosteric effects of PDB entries

 
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