Browse entries in the PDBbind-CN Database

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Related entries of code: 4n9d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2g96RCSB PDB    PDBbind491aa, >2G96_1|Chains... at 95%
2g97RCSB PDB    PDBbind491aa, >2G97_1|Chains... at 95%
2gvjRCSB PDB    PDBbind491aa, >2GVJ_1|Chains... at 100%
3dkjRCSB PDB    PDBbind484aa, >3DKJ_1|Chains... at 100%
3g8eRCSB PDB    PDBbind491aa, >3G8E_1|Chains... at 95%
4jnmRCSB PDB    PDBbind501aa, >4JNM_1|Chains... *
4jr5RCSB PDB    PDBbind501aa, >4JR5_1|Chains... at 100%
4kfpRCSB PDB    PDBbind501aa, >4KFP_1|Chains... at 100%
4l4lRCSB PDB    PDBbind501aa, >4L4L_1|Chains... at 100%
4l4mRCSB PDB    PDBbind501aa, >4L4M_1|Chains... at 100%
4ltsRCSB PDB    PDBbind501aa, >4LTS_1|Chains... at 100%
4lwwRCSB PDB    PDBbind501aa, >4LWW_1|Chains... at 100%
4m6pRCSB PDB    PDBbind501aa, >4M6P_1|Chains... at 100%
4m6qRCSB PDB    PDBbind501aa, >4M6Q_1|Chains... at 100%
4n9bRCSB PDB    PDBbind501aa, >4N9B_1|Chains... at 100%
4n9cRCSB PDB    PDBbind501aa, >4N9C_1|Chains... at 100%
4n9eRCSB PDB    PDBbind501aa, >4N9E_1|Chains... at 100%
4o0zRCSB PDB    PDBbind501aa, >4O0Z_1|Chains... at 100%
4o10RCSB PDB    PDBbind501aa, >4O10_1|Chains... at 100%
4o12RCSB PDB    PDBbind501aa, >4O12_1|Chains... at 100%
4o13RCSB PDB    PDBbind501aa, >4O13_1|Chains... at 100%
4o15RCSB PDB    PDBbind501aa, >4O15_1|Chains... at 99%
4o1bRCSB PDB    PDBbind501aa, >4O1B_1|Chains... at 99%
4o1dRCSB PDB    PDBbind501aa, >4O1D_1|Chains... at 99%
4o28RCSB PDB    PDBbind501aa, >4O28_1|Chains... at 99%
5kitRCSB PDB    PDBbind491aa, >5KIT_1|Chains... at 100%
5upeRCSB PDB    PDBbind499aa, >5UPE_1|Chains... at 98%
5upfRCSB PDB    PDBbind499aa, >5UPF_1|Chains... at 98%
5wi0RCSB PDB    PDBbind491aa, >5WI0_1|Chains... at 100%
5wi1RCSB PDB    PDBbind491aa, >5WI1_1|Chains... at 100%
6pebRCSB PDB    PDBbind500aa, >6PEB_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4n9d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman Nicotinamide Phosphoribosyltransferase (NAMPT)
Ligand Name2HJ
EC.Number E.C.2.4.2.12
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)IC50=0.019uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Bioorg.Med.Chem.Lett. Vol. 24: pp. 954-962
Ligand Properties
Formula C23H25N3O3S
Molecular Weight 423.528
Exact Mass 423.162
No. of atoms 55
No. of bonds 57
Polar Surface Area 96.54
LOGP Value 3.82      (Computed with XLOGP3)
5.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P43490  
Entrez Gene IDNCBI Entrez Gene ID: 10135  
ASDInformation of known allosteric effects of PDB entries
 
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