Browse entries in the PDBbind-CN Database

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Related entries of code: 4oyt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4tmrRCSB PDB    PDBbind442aa, >4TMR_1|Chains... at 100%
4tn4RCSB PDB    PDBbind442aa, >4TN4_1|Chains... at 100%
5gvkRCSB PDB    PDBbind442aa, >5GVK_1|Chains... at 100%
5gvlRCSB PDB    PDBbind442aa, >5GVL_1|Chains... at 100%
5gvmRCSB PDB    PDBbind442aa, >5GVM_1|Chains... at 100%
5gvnRCSB PDB    PDBbind442aa, >5GVN_1|Chains... at 100%
5gvpRCSB PDB    PDBbind442aa, >5GVP_1|Chains... at 100%
5xmpRCSB PDB    PDBbind442aa, >5XMP_1|Chains... at 99%
5xmrRCSB PDB    PDBbind442aa, >5XMR_1|Chains... at 99%
5xmsRCSB PDB    PDBbind442aa, >5XMS_1|Chains... at 100%
5xmtRCSB PDB    PDBbind442aa, >5XMT_1|Chains... at 100%
5xmuRCSB PDB    PDBbind442aa, >5XMU_1|Chains... at 100%
5xmvRCSB PDB    PDBbind442aa, >5XMV_1|Chains... at 100%
5yfzRCSB PDB    PDBbind442aa, >5YFZ_1|Chains... at 100%
5yg2RCSB PDB    PDBbind442aa, >5YG2_1|Chains... at 100%
5yg3RCSB PDB    PDBbind442aa, >5YG3_1|Chains... at 100%
5yg4RCSB PDB    PDBbind442aa, >5YG4_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4oyt
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSerine hydroxymethyltransferase, putative SHMT
Ligand NameFON
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=1.55mM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Acta Crystallogr.,Sect.D Vol. 70: pp. 3177-3186
Ligand Properties
Formula C20H24N7O7
Molecular Weight 474.447
Exact Mass 474.174
No. of atoms 58
No. of bonds 60
Polar Surface Area 215.12
LOGP Value 1.85      (Computed with XLOGP3)
-2.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A5K8L9  
Entrez Gene IDNCBI Entrez Gene ID: 5473173  
ASDInformation of known allosteric effects of PDB entries

 
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