Browse entries in the PDBbind-CN Database

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Related entries of code: 4pda
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4pb1RCSB PDB    PDBbind424aa, >4PB1_1|Chain... *
4pb2RCSB PDB    PDBbind424aa, >4PB2_1|Chain... at 100%
4pd5RCSB PDB    PDBbind424aa, >4PD5_1|Chain... at 100%
4pd6RCSB PDB    PDBbind424aa, >4PD6_1|Chain... at 100%
4pd7RCSB PDB    PDBbind424aa, >4PD7_1|Chain... at 99%
4pd8RCSB PDB    PDBbind424aa, >4PD8_1|Chain... at 100%
4pd9RCSB PDB    PDBbind424aa, >4PD9_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4jwkRCSB PDB    PDBbindCTN
5csoRCSB PDB    PDBbindCTN

Entry Information
PDB ID4pda
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameNupC family protein CNT-7C8C
Ligand NameCTN
EC.Number E.C.-.-.-.-
Resolution 2.61(Å)
Affinity (Kd/Ki/IC50)Kd=61uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Elife Vol. 3. e03604: pp.1-19
Ligand Properties
Formula C9H14N3O5
Molecular Weight 244.225
Exact Mass 244.093
No. of atoms 31
No. of bonds 32
Polar Surface Area 132.08
LOGP Value -1.12      (Computed with XLOGP3)
-2.56      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9KPL5  
Entrez Gene IDNCBI Entrez Gene ID: 57740963  
ASDInformation of known allosteric effects of PDB entries

 
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