Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5cso
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emfRCSB PDB    PDBbind246aa, >4EMF_1|Chain... *
4emrRCSB PDB    PDBbind246aa, >4EMR_1|Chain... at 100%
4i47RCSB PDB    PDBbind246aa, >4I47_1|Chain... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8_1|Chain... at 100%
5cstRCSB PDB    PDBbind246aa, >5CST_1|Chain... at 100%
5y48RCSB PDB    PDBbind246aa, >5Y48_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4jwkRCSB PDB    PDBbindCTN
4pdaRCSB PDB    PDBbindCTN
Entry Information
PDB ID5cso
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nametype 1 ribosome inactivating protein from Momordica balsamina (MbRIP1)
Ligand NameCTN
EC.Number E.C.3.2.2.22
Resolution 1.78(Å)
Affinity (Kd/Ki/IC50)Kd=940nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochem Biophys Rep Vol. 4: pp. 134-140
Ligand Properties
Formula C9H13N3O5
Molecular Weight 243.217
Exact Mass 243.086
No. of atoms 30
No. of bonds 31
Polar Surface Area 131.56
LOGP Value -2.21      (Computed with XLOGP3)
-2.63      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com