Browse entries in the PDBbind-CN Database

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Related entries of code: 5cst
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emfRCSB PDB    PDBbind246aa, >4EMF_1|Chain... *
4emrRCSB PDB    PDBbind246aa, >4EMR_1|Chain... at 100%
4i47RCSB PDB    PDBbind246aa, >4I47_1|Chain... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8_1|Chain... at 100%
5csoRCSB PDB    PDBbind246aa, >5CSO_1|Chain... at 100%
5y48RCSB PDB    PDBbind246aa, >5Y48_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5jptRCSB PDB    PDBbindCDP
6cvfRCSB PDB    PDBbindCDP
Entry Information
PDB ID5cst
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nametype 1 ribosome inactivating protein from Momordica balsamina (MbRIP1)
Ligand NameCDP
EC.Number E.C.3.2.2.22
Resolution 1.78(Å)
Affinity (Kd/Ki/IC50)Kd=110nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochem Biophys Rep Vol. 4: pp. 134-140
Ligand Properties
Formula C9H17N3O11P2
Molecular Weight 405.192
Exact Mass 405.034
No. of atoms 42
No. of bonds 43
Polar Surface Area 258.12
LOGP Value -5.20      (Computed with XLOGP3)
-3.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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