Browse entries in the PDBbind-CN Database

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Related entries of code: 4pp0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4powRCSB PDB    PDBbind265aa, >4POW_1|Chains... *
4poxRCSB PDB    PDBbind265aa, >4POX_1|Chains... at 100%
5itoRCSB PDB    PDBbind265aa, >5ITO_1|Chains... at 99%
5itpRCSB PDB    PDBbind265aa, >5ITP_1|Chains... at 100%
5ot8RCSB PDB    PDBbind265aa, >5OT8_1|Chains... at 99%
5ot9RCSB PDB    PDBbind265aa, >5OT9_1|Chains... at 100%
5otaRCSB PDB    PDBbind265aa, >5OTA_1|Chains... at 100%
5otcRCSB PDB    PDBbind265aa, >5OTC_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4powRCSB PDB    PDBbindOP1
Entry Information
PDB ID4pp0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNopaline-binding periplasmic protein NocT-M117N
Ligand NameOP1
EC.Number E.C.-.-.-.-
Resolution 1.57(Å)
Affinity (Kd/Ki/IC50)Kd=39.9uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Plos Pathog. Vol. 10. e1004444: pp.1-10
Ligand Properties
Formula C11H22N4O5
Molecular Weight 290.316
Exact Mass 290.159
No. of atoms 42
No. of bonds 42
Polar Surface Area 165.28
LOGP Value 0.25      (Computed with XLOGP3)
-2.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35120  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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