Browse entries in the PDBbind-CN Database

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Related entries of code: 5otc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4powRCSB PDB    PDBbind265aa, >4POW_1|Chains... *
4poxRCSB PDB    PDBbind265aa, >4POX_1|Chains... at 100%
4pp0RCSB PDB    PDBbind265aa, >4PP0_1|Chains... at 99%
5itoRCSB PDB    PDBbind265aa, >5ITO_1|Chains... at 99%
5itpRCSB PDB    PDBbind265aa, >5ITP_1|Chains... at 100%
5ot8RCSB PDB    PDBbind265aa, >5OT8_1|Chains... at 99%
5ot9RCSB PDB    PDBbind265aa, >5OT9_1|Chains... at 100%
5otaRCSB PDB    PDBbind265aa, >5OTA_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5otc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNopaline-binding periplasmic protein
Ligand NameAQK
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=19.3uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Sci Rep Vol. 7: pp. 18033-18033
Ligand Properties
Formula C7H16N2O4
Molecular Weight 192.213
Exact Mass 192.111
No. of atoms 29
No. of bonds 28
Polar Surface Area 118.85
LOGP Value -4.00      (Computed with XLOGP3)
-2.89      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35120  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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