Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4r07
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4r0aRCSB PDB    PDBbind811aa, >4R0A_1|Chain... at 100%
5wyxRCSB PDB    PDBbind811aa, >5WYX_1|Chains... at 100%
5wyzRCSB PDB    PDBbind811aa, >5WYZ_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4r07
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameToll-like receptor 8
Ligand NameUCG
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=4.8uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Nat.Struct.Mol.Biol. Vol. 22: pp. 109-115
Ligand Properties
Formula C19H28N7O18P3
Molecular Weight 735.383
Exact Mass 735.070
No. of atoms 75
No. of bonds 80
Polar Surface Area 412.92
LOGP Value -6.48      (Computed with XLOGP3)
-4.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 25
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NR97  
Entrez Gene IDNCBI Entrez Gene ID: 51311  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com