Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5wyz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4r07RCSB PDB    PDBbind811aa, >4R07_1|Chains... *
4r0aRCSB PDB    PDBbind811aa, >4R0A_1|Chain... at 100%
5wyxRCSB PDB    PDBbind811aa, >5WYX_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5wyz
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameToll-like receptor 8
Ligand Name7VF
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=21nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat. Chem. Biol. Vol. 14: pp. 58-64
Ligand Properties
Formula C16H13NO2
Molecular Weight 251.280
Exact Mass 251.095
No. of atoms 32
No. of bonds 34
Polar Surface Area 53.35
LOGP Value 3.47      (Computed with XLOGP3)
3.62      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NR97  
Entrez Gene IDNCBI Entrez Gene ID: 51311  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com