Browse entries in the PDBbind-CN Database

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Related entries of code: 4z07
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ocpRCSB PDB    PDBbind139aa, >3OCP_1|Chains... at 97%
3od0RCSB PDB    PDBbind139aa, >3OD0_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3od0RCSB PDB    PDBbindPCG
4muvRCSB PDB    PDBbindPCG
5h5oRCSB PDB    PDBbindPCG
6hq7RCSB PDB    PDBbindPCG

Entry Information
PDB ID4z07
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamecGMP-dependent protein kinase 1
Ligand NamePCG
EC.Number E.C.2.7.11.12
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=10.3nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Structure Vol. 24: pp. 1-11
Ligand Properties
Formula C10H13N5O7P
Molecular Weight 346.213
Exact Mass 346.055
No. of atoms 36
No. of bonds 39
Polar Surface Area 191.56
LOGP Value -3.47      (Computed with XLOGP3)
-1.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13976  
Entrez Gene IDNCBI Entrez Gene ID: 5592  
ASDInformation of known allosteric effects of PDB entries

 
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